Publications

  • 2013
  • Dudzik J, Chang WC, Kannan AM, Filipek S, Viswanathan S, Li P, Renugopalakrishnan V, Audette GF. Cross-linked glucose oxidase clusters for biofuel cell anode catalysts. 2013. Biofabrication, 5(3) 035009. details
  • Wu Y, Yuan S, Chen S, Wu D, Chen J, Wu J. Enhancing the production of galacto-oligosaccharides by mutagenesis of Sulfolobus solfataricus β-galactosidase. 2013. Food Chem, 138(2-3) 1588-95. details
  • Pulawski W, Filipek S, Zwolinska A, Debinski A, Krzysko K, Garduño-Juárez R, Viswanathan S, Renugopalakrishnan V. Low-temperature molecular dynamics simulations of horse heart cytochrome c and comparison with inelastic neutron scattering data. 2013. Eur Biophys J, 42(4) 291-300. details
  • Latek D, Pasznik P, Carlomagno T, Filipek S. Towards Improved Quality of GPCR Models by Usage of Multiple Templates and Profile-Profile Comparison. 2013. PLoS One, 8(2) e56742. details
  • 2012
  • Pulawski W, Ghoshdastider U, Andrisano V, Filipek S. Ubiquitous amyloids. 2012. Appl Biochem Biotechnol, 166(7) 1626-43. details
  • Naldi M, Fiori J, Pistolozzi M, Drake AF, Bertucci C, Wu R, Mlynarczyk K, Filipek S, De Simone A, Andrisano V. Amyloid β-Peptide 25-35 Self-Assembly and Its Inhibition: A Model Undecapeptide System to Gain Atomistic and Secondary Structure Details of the Alzheimer's Disease Process and Treatment. 2012. ACS Chem Neurosci, 3(11) 952-62. details
  • Yuan S, Ghoshdastider U, Trzaskowski B, Latek D, Debinski A, Pulawski W, Wu R, Gerke V, Filipek S. The Role of Water in Activation Mechanism of Human N-Formyl Peptide Receptor 1 (FPR1) Based on Molecular Dynamics Simulations. 2012. PLoS One, 7(11) 1425-33. details
  • Trzaskowski B, Latek D, Yuan S, Ghoshdastider U, Debinski A, Filipek S. Action of Molecular Switches in GPCRs - Theoretical and Experimental Studies. 2012. Curr Med Chem, 19(8) 1090-109. details
  • 2011
  • Audette GF, Lombardo S, Dudzik J, Arruda TM, Kolinski M, Filipek S, Mukerjee S, Kannan AM, Thavasi V, Ramakrishna S, Chin M, Somasundaran P, Viswanathan S, Keles RS, Renugopalakrishnan V. Modeling of ligand binding to G protein coupled receptors: cannabinoid CB(1), CB (2) and adrenergic β (2)AR.. 2011. Materials Today, 14(7-8) 360-365. details
  • Latek D, Kolinski M, Ghoshdastider U, Debinski A, Bombolewski R, Plazinska A, Jozwiak K, Filipek S. Modeling of ligand binding to G protein coupled receptors: cannabinoid CB(1), CB (2) and adrenergic β (2)AR. 2011. J Mol Model, 17(9) 2353-66. details
  • Koch R, Lipton AS, Filipek S, Renugopalakrishnan V. Arginine interactions with anatase TiO(2) (100) surface and the perturbation of (49)Ti NMR chemical shifts - a DFT investigation: relevance to Renu-Seeram bio solar cell. 2011. J Mol Model, 17 1467-72. details
  • 2010
  • Kolinski M, Filipek S. Study of a structurally similar kappa opioid receptor agonist and antagonist pair by molecular dynamics simulations.. 2010. J Mol Model, 16 1567-76. details
  • Zurawska A, Urbanski J, Matuliene J, Baraniak J, Klejman MP, Filipek S, Matulis D, Bieganowski P. Mutations that increase both Hsp90 ATPase activity in vitro and Hsp90 drug resistance in vivo.. 2010. Biochim Biophys Acta, 1803 575-83. details
  • 2009
  • M. Kolinfski, S. Filipek. Studies of the Activation Steps Concurrent to Ligand Binding in δOR and κOR Opioid Receptors Based on Molecular Dynamics Simulations. 2009. TOSBJ, 3 51-63. details
  • Kilanczyk E, Filipek S, Jastrzebska B, Filipek A. CacyBP/SIP binds ERK1/2 and affects transcriptional activity of Elk-1. 2009. Biochem Biophys Res Commun, 380 54-9. details
  • Austermann J, Nazmi AR, Heil A, Fritz G, Kolinski M, Filipek S, Gerke V. Generation and characterization of a novel, permanently active S100P mutant.. 2009. Biochim Biophys Acta, 1793 1078-85. details
  • Thavasi V, Lazarova T, Filipek S, Kolinski M, Querol E, Kumar A, Ramakrishna S, Padrós E, Renugopalakrishnan V. Study on the feasibility of bacteriorhodopsin as bio-photosensitizer in excitonic solar cell: a first report.. 2009. J Nanosci Nanotechnol, 9 1679-87. details
  • Kannan AM, Renugopalakrishnan V, Filipek S, Li P, Audette GF, Munukutla L. Bio-batteries and bio-fuel cells: leveraging on electronic charge transfer proteins.. 2009. J Nanosci Nanotechnol, 9 1665-78. details
  • V. Renugopalakrishnan, A. M. Kannan, S. Srinivasan, V. Thavasi, S. Ramakrishna, P. Li, A. Mershin, S. Filipek, A. Kumar, J. Dutta, A. Jaya, L. Munukutla, S. Velumani, G. F. Audette. “Nanomaterials for Energy Convertion Applications”. 2009. \"Nanomaterials for Energy Storage Applications\", 155-178. details
  • S. Filipek. “Bioinformatyka strukturalna białek transbłonowych”. 2009. Kosmos, 58 57-66. details
  • Park PS, Sapra KT, Jastrzebska B, Maeda T, Maeda A, Pulawski W, Kono M, Lem J, Crouch RK, Filipek S, Müller DJ, Palczewski K. Modulation of molecular interactions and function by rhodopsin palmitylation. 2009. Biochemistry, 48 4294-304. details
  • J.S. Jaworski, A. Kosson, S. Filipek, M. Kolinski, D. Kuck. Properties of Radical Anions of Triptindanones and Indanones: Electronic Communication and Stability of Ion Pairs Containing Lithium Cations. 2009. J. Phys. Chem. C, 113 (17) 7436-7442. details
  • 2008
  • Kolinski M, Filipek S.. Molecular dynamics of mu opioid receptor complexes with agonists and antagonists. 2008. The Open Struct. Biol. J., 2 8-20. details
  • Jozwiak K, Krzysko KA, Bojarski L, Gacia M, Filipek S. Molecular models of the interface between anterior pharynx-defective protein 1 (APH-1) and presenilin involving GxxxG motifs. 2008. ChemMedChem, 3 627-34. details
  • Bhatia P, Kolinski M, Moaddel R, Jozwiak K, Wainer IW. Determination and modelling of stereoselective interactions of ligands with drug transporters: a key dimension in the understanding of drug disposition. 2008. Xenobiotica, 38 656-75. details
  • Stephen R, Filipek S, Palczewski K, Sousa MC. Ca2+ -dependent regulation of phototransduction.. 2008. Photochem Photobiol, 84 903-10. details
  • Majewski T, Lee S, Jeong J, Yoon DS, Kram A, Kim MS, Tuziak T, Bondaruk J, Lee S, Park WS, Tang KS, Chung W, Shen L, Ahmed SS, Johnston DA, Grossman HB, Dinney CP, Zhou JH, Harris RA, Snyder C, Filipek S, Narod SA, Watson P, Lynch HT, Gazdar A, Bar-Eli M,. Understanding the development of human bladder cancer by using a whole-organ genomic mapping strategy.. 2008. Lab Invest, 88 694-721. details
  • 2007
  • Golan MP, Styczyńska M, Jóźwiak K, Walecki J, Maruszak A, Pniewski J, Lugiewicz R, Filipek S, Zekanowski C, Barcikowska M. Early-onset Alzheimer's disease with a de novo mutation in the presenilin 1 gene. 2007. Exp Neurol, 208 264-8. details
  • Krzysko KA, Kolinski M, Filipek S.. Molecular modelling of the complex of oligomeric rhodopsin and its G protein.. 2007. J Phys Condens Matter, 19 285204. details
  • Lee S, Jeong J, Majewski T, Scherer SE, Kim MS, Tuziak T, Tang KS, Baggerly K, Grossman HB, Zhou JH, Shen L, Bondaruk J, Ahmed SS, Samanta S, Spiess P, Wu X, Filipek S, McConkey D, Bar-Eli M, Issa JP, Benedict WF, Czerniak B. Forerunner genes contiguous to RB1 contribute to the development of in situ neoplasia.. 2007. Proc Natl Acad Sci U S A, 104 13732-7. details
  • Park PS, Sapra KT, Koliński M, Filipek S, Palczewski K, Muller DJ. Stabilizing effect of Zn2+ in native bovine rhodopsin. 2007. J Biol Chem, 282 11377-85. details
  • 2006
  • Cieplak M, Filipek S, Janovjak H, Krzyśko KA. Pulling single bacteriorhodopsin out of a membrane: Comparison of simulation and experiment.. 2006. Biochim Biophys Acta, 1758 537-44. details
  • Jozwiak K, Zekanowski C, Filipek S. Linear patterns of Alzheimer's disease mutations along alpha-helices of presenilins as a tool for PS-1 model construction. 2006. J Neurochem, 98 1560-72. details
  • Modzelewska A, Filipek S, Palczewski K, Park PS. Arrestin interaction with rhodopsin: conceptual models.. 2006. Cell Biochem Biophys, 46 1-15. details
  • Tanuj Sapra K, Park PS, Filipek S, Engel A, Müller DJ, Palczewski K. Detecting molecular interactions that stabilize native bovine rhodopsin. 2006. J Mol Biol, 358 255-69. details
  • Zekanowski C, Golan MP, Krzyśko KA, Lipczyńska-Łojkowska W, Filipek S, Kowalska A, Rossa G, Pepłońska B, Styczyńska M, Maruszak A, Religa D, Wender M, Kulczycki J, Barcikowska M, Kuźnicki J. Two novel presenilin 1 gene mutations connected with frontotemporal dementia-like clinical phenotype: genetic and bioinformatic assessment.. 2006. Exp Neurol, 200 82-8. details
  • Zhu L, Imanishi Y, Filipek S, Alekseev A, Jastrzebska B, Sun W, Saperstein DA, Palczewski K. Autosomal recessive retinitis pigmentosa and E150K mutation in the opsin gene.. 2006. J Biol Chem, 281 22289-98. details
  • Jaworski JS, Cembor M, Koliński M. Electrostatic model of bond dissociation energies in polyhalogen methanes. 2006. J Phys Org Chem, 19 276-280. details
  • 2005
  • Filipek S. Organization of rhodopsin molecules in native membranes of rod cells--an old theoretical model compared to new experimental data.. 2005. J Mol Model, 11 385-91. details
  • Filipek S, Modzelewska A, Krzysko KA. Functional oligomers of rhodopsin – a G protein-coupled receptor template. 2005. Joint Meeting on Medical Chemistry, . details
  • Sokal I, Dupps WJ, Grassi MA, Brown J Jr, Affatigato LM, Roychowdhury N, Yang L, Filipek S, Palczewski K, Stone EM, Baehr W. A novel GCAP1 missense mutation (L151F) in a large family with autosomal dominant cone-rod dystrophy (adCORD). 2005. Invest Ophthalmol Vis Sci, 46 1124-32. details
  • 2004
  • Filipek S, Krzysko KA , Fotiadis D, Liang Y, Saperstein DA, Engel A, Palczewski K. A concept for G protein activation by G protein-coupled receptor dimers: the transducin/rhodopsin interface. 2004. Photochem Photobiol Sci, 3 628-38. details
  • Fotiadis D, Liang Y, Filipek S, Saperstein DA, Engel A, Palczewski K. The G protein-coupled receptor rhodopsin in the native membrane. 2004. FEBS Lett, 564 281-8. details
  • Imanishi Y, Yang L, Sokal I, Filipek S, Palczewski K, Baehr W. Diversity of guanylate cyclase-activating proteins (GCAPs) in teleost fish: characterization of three novel GCAPs (GCAP4, GCAP5, GCAP7) from zebrafish (Danio rerio) and prediction of eight GCAPs (GCAP1-8) in pufferfish (. 2004. J Mol Evol, 59 204-17. details
  • Jastrzebska B, Maeda T, Zhu L, Fotiadis D, Filipek S, Engel A, Stenkamp RE, Palczewski K. Functional characterization of rhodopsin monomers and dimers in detergents. 2004. J Biol Chem, 279 54663-75. details
  • Liang Y, Fotiadis D, Maeda T, Maeda A, Modzelewska A, Filipek S, Saperstein DA, Engel A, Palczewski K. Rhodopsin signaling and organization in heterozygote rhodopsin knockout mice. 2004. J Biol Chem, 279 48189-96. details
  • Park PS, Filipek S, Wells JW, Palczewski K. Oligomerization of G protein-coupled receptors: past, present, and future.. 2004. Biochemistry, 43 15643-56. details
  • Suda K, Filipek S, Palczewski K, Engel A, Fotiadis D. The supramolecular structure of the GPCR rhodopsin in solution and native disc membranes.. 2004. Mol Membr Biol, 21 435-46. details
  • Zhu L, Jang GF, Jastrzebska B, Filipek S, Pearce-Kelling SE, Aguirre GD, Stenkamp RE, Acland GM, Palczewski K. A naturally occurring mutation of the opsin gene (T4R) in dogs affects glycosylation and stability of the G protein-coupled receptor.. 2004. J Biol Chem, 279 53828-39. details
  • Zekanowski C, Religa D, Graff C, Filipek S, Kuźnicki J. Genetic aspects of Alzheimer's disease. 2004. Acta Neurobiol Exp (Wars), 64 19-31. details
  • 2003
  • Filipek S, Teller DC, Palczewski K, Stenkamp R. The crystallographic model of rhodopsin and its use in studies of other G protein-coupled receptors.. 2003. Annu Rev Biophys Biomol Struct, 32 375-97. details
  • Fotiadis D, Liang Y, Filipek S, Saperstein DA, Engel A, Palczewski K. Atomic-force microscopy: Rhodopsin dimers in native disc membranes. 2003. Nature, 421 127-8. details
  • Fritze O, Filipek S, Kuksa V, Palczewski K, Hofmann KP, Ernst OP. Role of the conserved NPxxY(x)5,6F motif in the rhodopsin ground state and during activation.. 2003. Proc Natl Acad Sci U S A, 100 2290-5. details
  • Liang Y, Fotiadis D, Filipek S, Saperstein DA, Palczewski K, Engel A. Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes.. 2003. J Biol Chem, 278 21655-62. details
  • Liang Y, Fotiadis D, Filipek S, Saperstein DA, Palczewski K, Engel A. Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes. 2003. J Biol Chem, 278 21655-62. details
  • Maeda T, Van Hooser JP, Driessen CA, Filipek S, Janssen JJ, Palczewski K. Evaluation of the role of the retinal G protein-coupled receptor (RGR) in the vertebrate retina in vivo.. 2003. J Neurochem, 85 944-56. details
  • Mirzadegan T, Benkö G, Filipek S, Palczewski K. Sequence analyses of G-protein-coupled receptors: similarities to rhodopsin.. 2003. Biochemistry, 42 2759-67. details
  • Noorwez SM, Kuksa V, Imanishi Y, Zhu L, Filipek S, Palczewski K, Kaushal S. Pharmacological chaperone-mediated in vivo folding and stabilization of the P23H-opsin mutant associated with autosomal dominant retinitis pigmentosa.. 2003. J Biol Chem, 278 14442-50. details
  • Schadel SA, Heck M, Maretzki D, Filipek S, Teller DC, Palczewski K, Hofmann KP. Ligand channeling within a G-protein-coupled receptor. The entry and exit of retinals in native opsin.. 2003. J Biol Chem, 278 24896-903. details
  • Nowotny M, Spiechowicz M, Jastrzebska B, Filipek A, Kitagawa K, Kuznicki J. Calcium-regulated interaction of Sgt1 with S100A6 (calcyclin) and other S100 proteins. 2003. J Biol Chem., 278(29) 26923-8. details
  • 2002
  • Kuksa V, Bartl F, Maeda T, Jang GF, Ritter E, Heck M, Van Hooser JP, Liang Y, Filipek S, Gelb MH, Hofmann KP, Palczewski K. Biochemical and physiological properties of rhodopsin regenerated with 11-cis-6-ring- and 7-ring-retinals.. 2002. J Biol Chem, 277 42315-24. details