Publications

  • 2013
  • Kapitein LC, van Bergeijk P, Lipka J, Keijzer N, Wulf PS, Katrukha EA, Akhmanova A, Hoogenraad CC. Myosin-V Opposes Microtubule-Based Cargo Transport and Drives Directional Motility on Cortical Actin. 2013. Curr Biol, [Epub ahead of print], pii: S0960-9822(13)00370-9. details
  • Sadowski L, Jastrzębski K, Kalaidzidis Y, Heldin CH, Hellberg C, Miaczynska M. Dynamin Inhibitors Impair Endocytosis and Mitogenic Signaling of PDGF. 2013. Traffic, [Epub ahead of print], . details
  • Bragoszewski P, Gornicka A, Sztolsztener ME, Chacinska A. The ubiquitin-proteasome system regulates mitochondrial intermembrane space proteins. 2013. Mol Cell Biol, [Epub ahead of print], . details
  • Kuzniewska B, Rejmak E, Malik AR, Jaworski J, Kaczmarek L, Kalita K. Brain-derived neurotrophic factor induces matrix metalloproteinase-9 expression in neurons via serum response factor/c-Fos pathway. 2013. Mol Cell Biol, [Epub ahead of print], . details
  • van Spronsen M, Mikhaylova M, Lipka J, Schlager MA, van den Heuvel DJ, Kuijpers M, Wulf PS, Keijzer N, Demmers J, Kapitein LC, Jaarsma D, Gerritsen HC, Akhmanova A, Hoogenraad CC . TRAK/Milton Motor-Adaptor Proteins Steer Mitochondrial Trafficking to Axons and Dendrites. 2013. Neuron, 77(3), 485-502. details
  • Jaworska A, Dzbek J, Styczynska M, Kuznicki J . Analysis of calcium homeostasis in fresh lymphocytes from patients with sporadic Alzheimer's disease or mild cognitive impairment. 2013. Biochim Biophys Acta, [Epub ahead of print], . details
  • Bik W, Baranowska-Bik A, Wolinska-Witort E, Kalisz M, Broczek K, Mossakowska M, Baranowska B . Assessment of adiponectin and its isoforms in Polish centenarians. 2013. Exp Gerontol, [Epub ahead of print], . details
  • Golanska E, Sieruta M, Gresner SM, Pfeffer A, Chodakowska-Zebrowska M, Sobow TM, Klich I, Mossakowska M, Szybinska A, Barcikowska M, Liberski PP . APBB2 genetic polymorphisms are associated with severe cognitive impairment in centenarians. 2013. Exp Gerontol, [Epub ahead of print], . details
  • Golanska E, Sieruta M, Corder E, Gresner SM, Pfeffer A, Chodakowska-Zebrowska M, Sobow TM, Klich I, Mossakowska M, Szybinska A, Barcikowska M, Liberski PP . The prion protein M129V polymorphism: Longevity and cognitive impairment among Polish centenarians. 2013. Prion, 7(3), . details
  • Wisniewska MB. Physiological Role of β-Catenin/TCF Signaling in Neurons of the Adult Brain. 2013. Neurochem Res, [Epub ahead of print], . details
  • Nowak E, Potrzebowski W, Konarev PV, Rausch JW, Bona MK, Svergun DI, Bujnicki JM, Le Grice SF, Nowotny M. Structural analysis of monomeric retroviral reverse transcriptase in complex with an RNA/DNA hybrid. 2013. Nucleic Acids Res, [Epub ahead of print], . details
  • Malik AR, Urbanska M, Gozdz A, Swiech LJ, Nagalski A, Perycz M, Blazejczyk M, Jaworski J. CYR61, a matricellular protein, is needed for dendritic arborization of hippocampal neurons. 2013. J Biol Chem, [Epub ahead of print], . details
  • Wrobel L, Trojanowska A, Sztolsztener ME, Chacinska A. Mitochondrial protein import: Mia40 facilitates Tim22 translocation into the inner membrane of mitochondria. 2013. Mol Biol Cell, 24(5), 543-54. details
  • Varabyova A, Stojanovski D, Chacinska A. Mitochondrial protein homeostasis. 2013. IUBMB Life, 65(3), 191-201. details
  • Roszkowska-Gancarz M, Bartoszewicz Z, Polosak J, Kurylowicz A, Jonas M, Mossakowska M, Franek E, Puzianowska-Kuźnicka M. Total and high molecular weight adiponectin and level-modifying polymorphisms of ADIPOQ in centenarians. 2013. Endokrynologia Polska, 63 (6), 439-446. details
  • Esteras N, Alquézar C, Bermejo-Pareja F, Bialopiotrowicz E, Wojda U, Martín-Requero A. Downregulation of extracellular signal-regulated kinase 1/2 activity by calmodulin KII modulates p21(Cip1) levels and survival of immortalized lymphocytes from Alzheimer's disease patients. 2013. Neurobiol Aging, 34(4), 1090-100. details
  • Milanowska K, Mikolajczak K, Lukasik A, Skorupski M, Balcer Z, Machnicka MA, Nowacka M, Rother KM, Bujnicki JM. RNApathwaysDB – a database of RNA maturation and decay pathways. 2013. Nucleic Acids Res, 41(D1), D268-72. details
  • Machnicka MA, Milanowska K, Osman Oglou O, Purta E, Kurkowska M, Olchowik A, Januszewski W, Kalinowski S, Dunin-Horkawicz S, Rother KM, Helm M, Bujnicki JM, Grosjean H. MODOMICS: a database of RNA modification pathways: 2013 update. 2013. Nucleic Acids Res, 41(D1), D262-7. details
  • Wojciechowski M, Czapinska H, Bochtler M. CpG Underrepresentation and the Bacterial CpG Specific DNA Methyltransferase M.MpeI. 2013. Proc Natl Acad Sci U S A., 110(1), 105-10. details
  • Sztolsztener ME, Brewinska A, Guiard B, Chacinska A . Disulfide bond formation: sulfhydryl oxidase ALR controls mitochondrial biogenesis of human MIA40. 2013. Traffic, 14(3), 309-20. details
  • Pyrzynska B, Banach-Orlowska M, Teperek-Tkacz M, Miekus K, Drabik G, Majka M, Miaczynska M. Multifunctional protein APPL2 contributes to survival of human glioma cells. 2013. Mol Oncol., 7(1), 67-84. details
  • Kraszewska MD, Dawidowska M, Kosmalska M, Sędek Ł, Grzeszczak W, Kowalczyk JR, Szczepański T, Witt M. BCL11B, FLT3, NOTCH1 and FBXW7 mutation status in T-cell Acute Lymphoblastic Leukemia patients. 2013. Blood Cells, Molecules and Diseases, 50(1), 33-8. details
  • 2012
  • Pfeffer A, Chodakowska M, Czyżewski K, Gabryelewicz T, Łuczywek Ł, Mossakowska M, Broczek K, Barcikowska M. The Prevalence of Dementia in Warsaw Centenarians: a Population – Based Study. 2012. Postępy Nauk Medycznych, XXV (1), 28-33. details
  • Kozlowski L, Orlowski J, Bujnicki JM. Structure prediction of alternatively spliced proteins In „Alternative pre-mRNA Splicing: Theory and Protocols: The Complete Guide for Biomedical Scientists”. 2012. , , . details
  • Rother K, Rother M, Boniecki M, Puton T, Tomala K, Lukasz P, Bujnicki JM. Template-based and template-free modeling of RNA 3D structure: inspirations from protein structure modeling In "RNA Structure Prediction and Modelling". 2012. , , . details
  • Kapustian LL, Vigontina OA, Rozhko OT, Ryabenko DV, Michowski W, Lesniak W, Filipek A, Kroupskaya IV, Sidorik LL. Hsp90 and its co-chaperone, Sgt1, as autoantigens in dilated cardiomyopathy. 2012. Heart Vessels, [Epub ahead of print], . details
  • Pulawski W, Ghoshdastider U, Andrisano V, Filipek S. Ubiquitous amyloids. 2012. Appl Biochem Biotechnol, 166(7), 1626-43. details
  • Kozlowski LP, Bujnicki JM. MetaDisorder: A meta-server for the prediction of intrinsic disorder in proteins. 2012. BMC Bioinformatics, 13, 111. details
  • Kasprzak JM, Czerwoniec A, Bujnicki JM. Molecular evolution of dihydrouridine synthases. 2012. BMC Bioinformatics, 13, 153. details
  • Korneta I, Bujnicki JM. Intrinsic disorder in the human spliceosomal proteome. 2012. PLoS Comput Biol, 8(8), e1002641. details
  • Kusio-Kobialka M, Wolanin K, Podszywalow-Bartnicka P, Sikora E, Skowronek K, McKenna SL, Ghizzoni M, Dekker FJ, Piwocka K. Increased acetylation of lysine 317/320 of p53 caused by BCR-ABL protects from cytoplasmic translocation of p53 and mitochondria-dependent apoptosis in response to DNA damage. 2012. Apoptosis, 17(9), 950-63. details
  • Roszczenko P, Radomska KA, Wywial E, Collet JF, Jagusztyn-Krynicka EK. A novel insight into the oxidoreductase activity of Helicobacter pylori HP0231 protein. 2012. PLoS One, 7(10), e46563. details
  • Al-Haggar M, Madej-Pilarczyk A, Kozlowski L, Bujnicki JM, Yahia S, Abdel-Hadi D, Shams A, Ahmad N, Hamed S, Puzianowska-Kuznicka M. A novel homozygous p.Arg527Leu LMNA mutation in two unrelated egyptian families causes overlapping mandibuloacral dysplasia and progeria syndrome. 2012. Eur J Hum Genet, 20(11), 1134-40. details
  • Naldi M, Fiori J, Pistolozzi M, Drake AF, Bertucci C, Wu R, Mlynarczyk K, Filipek S, De Simone A, Andrisano V. Amyloid β-Peptide 25-35 Self-Assembly and Its Inhibition: A Model Undecapeptide System to Gain Atomistic and Secondary Structure Details of the Alzheimer's Disease Process and Treatment. 2012. ACS Chem Neurosci, 3(11), 952-62. details
  • Yuan S, Ghoshdastider U, Trzaskowski B, Latek D, Debinski A, Pulawski W, Wu R, Gerke V, Filipek S. The Role of Water in Activation Mechanism of Human N-Formyl Peptide Receptor 1 (FPR1) Based on Molecular Dynamics Simulations. 2012. PLoS One, 7(11), 1425-33. details
  • Magnus M, Pawlowski M, Bujnicki JM. MetaLocGramN: A meta-predictor of protein subcellular localization for Gram-negative bacteria. 2012. Biochim Biophys Acta, 1824(12), 1425-33. details
  • Laczmanski L, Milewicz A, Lwow F, Puzianowska-Kuznicka M, Pawlak M, Kolackov K, Jedrzejuk D, Krzyzanowska-Swiniarska B, Bar-Andziak E, Chudek J, Mossakowska M. Vitamin D receptor gene polymorphism and cardiovascular risk variables in elderly Polish subjects. 2012. Gynecol Endocrinol, [Epub ahead of print], . details
  • Skalska A, Wizner B, Piotrowicz K, Klich-Rączka A, Klimek E, Mossakowska M, Rowiński R, Kozak-Szkopek E, Jóźwiak A, Gąsowski J, Grodzicki T. The prevalence of falls and their relation to visual and hearing impairments among a nation-wide cohort of older Poles. 2012. Exp Gerontol, 48(2), 140-6. details
  • Malik AR, Urbanska M, Macias M, Skalecka A, Jaworski J. Beyond control of protein translation: What we have learned about the non-canonical regulation and function of mammalian target of rapamycin (mTOR). 2012. Nucleic Acids Res, [Epub ahead of print], pii: S1570-9639(12)00290-7. details
  • Skowronek K, Boniecki MJ, Kluge B, Bujnicki JM. Rational engineering of sequence specificity in R.MwoI restriction endonuclease. 2012. Nucleic Acids Res, 40(17), 8579-92. details
  • Poleszak K, Kaminska KH, Dunin-Horkawicz S, Lupas A, Skowronek KJ, Bujnicki JM. Delineation of structural domains and identification of functionally important residues in DNA repair enzyme Exonuclease VII. 2012. Nucleic Acids Res, 40(16), 8163-74. details
  • Korneta I, Magnus M, Bujnicki JM. Structural bioinformatics of the human spliceosomal proteome. 2012. Nucleic Acids Res, 40(15), 7046-65. details
  • Drozdz M, Piekarowicz A, Bujnicki JM, Radlinska M. Novel non-specific DNA adenine methyltransferases. 2012. Nucleic Acids Res, 40(5), 2119-30. details
  • Sulej AA, Tuszynska I, Skowronek KJ, Nowotny M, Bujnicki JM. Sequence-specific cleavage of the RNA strand in DNA-RNA hybrids by the fusion of ribonuclease H with a zinc finger. 2012. Nucleic Acids Res, 40(22), 11563-70. details
  • Pawlowski M, Bujnicki JM. The utility of comparative models and the local model quality for protein crystal structure determination by Molecular Replacement. 2012. BMC Bioinformatics, 13(1), 289. details
  • Pietal MJ, Szostak N, Rother KM, Bujnicki JM. RNAmap2D -- calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures. 2012. BMC Bioinformatics, 13(1), 333. details
  • Bochtler M. Structural basis of the TAL effector-DNA interaction. 2012. Biol Chem, 393(10), 1055-66. details
  • Wiech M, Olszewski M, Tracz-Gaszewska Z, Wawrzynow B, Zylicz M, Zylicz A. Molecular Mechanism of Mutant p53 Stabilization: The Role of HSP70 and MDM2. 2012. PLoS One, 7(12), e51426. details
  • Nagalski A, Irimia M, Szewczyk L, Ferran JL, Misztal K, Kuznicki J, Wisniewska MB. Postnatal isoform switch and protein localization of LEF1 and TCF7L2 transcription factors in cortical, thalamic, and mesencephalic regions of the adult mouse brain. 2012. Brain Struct Funct, [Epub ahead of print], . details
  • Wisniewska MB, Nagalski A, Dabrowski M, Misztal K, Kuznicki J. Novel beta-catenin target genes identified in thalamic neurons encode modulators of neuronal excitability. 2012. BMC Genomics, 13(1), 635. details
  • Sabala I, Jonsson IM, Tarkowski A, Bochtler M. Anti-staphylococcal activities of lysostaphin and LytM catalytic domain. 2012. BMC Microbiol, 12, 97. details
  • Siwek W, Czapinska H, Bochtler M, Bujnicki JM, Skowronek K. Crystal structure and mechanism of action of the N6-methyladenine dependent type IIM restriction endonuclease. 2012. Nucleic Acids Res, 40(15), 7563-72. details
  • Bukowy-Bieryłło Z, Ziętkiewicz E, Loges NT, Wittmer M, Geremek M, Olbrich H, Fliegauf M, Voelkel K, Rutkiewicz E, Rutland J, Morgan L, Pogorzelski A, Martin J, Haan E, Berger W, Omran H, Witt M. RPGR mutations might cause reduced orientation of respiratory cilia. 2012. Pediatr Pulmonol., [Epub ahead of print], . details
  • Winiarska M, Nowis D, Bil J, Glodkowska-Mrowka E, Muchowicz A, Wanczyk M, Bojarczuk K, Dwojak M, Firczuk M, Wilczek E, Wachowska M, Roszczenko K, Miaczynska M, Chlebowska J, Basak GW, Golab J. Prenyltransferases Regulate CD20 Protein Levels and Influence Anti-CD20 Monoclonal Antibody-mediated Activation of Complement-dependent Cytotoxicity. 2012. J Biol Chem, 287(38), 31983-93. details
  • Böttinger L*, Gornicka A*, Czerwik T, Bragoszewski P, Loniewska-Lwowska A, Schulze-Specking A, Truscott KN, Guiard B, Milenkovic D, Chacinska A, *equally contributing first author. In vivo evidence for cooperation of Mia40 and Erv1 in the oxidation of mitochondrial proteins. 2012. Mol Biol Cell, 23(20), 3957-69. details
  • Voegtle FN, Burkhart JM, Rao S, Gerbeth C, Hinrichs J, Martinou JC, Chacinska A, Sickmann A, Zahedi RP, Meisinger C. Intermembrane space proteome of yeast mitochondria. 2012. Mol Cell Proteomics, 11(12), 1840-52. details
  • Bohnert M, Wenz LS, Zerbes RM, Horvath SE, Stroud DA, von der Malsburg K, Müller JM, Oeljeklaus S, Perschil I, Warscheid B, Chacinska A, Veenhuis M, van der Klei IJ, Daum G, Wiedemann N, Becker T, Pfanner N, van der Laan M. Role of MINOS in protein biogenesis of the mitochondrial outer membrane. 2012. Mol Biol Cell., 23(20), 3948-56. details
  • Knapska E, Macias M, Mikosz M, Nowak A, Owczarek D, Wawrzyniak M, Pieprzyk M, Cymerman IA, Werka T, Sheng M, Maren S, Jaworski J, Kaczmarek L. Functional anatomy of neural circuits regulating fear and extinction. 2012. Proc. Natl. Acad. Sci., 109(42), 17093-8. details
  • Green RA,Paluch E, Oegema K. Cytokinesis in Animal Cells. 2012. Annu Rev Cell Dev Biol., 28, 29-58. details
  • Salbreux G, Charras G, Paluch E. Actin cortex mechanics and cellular morphogenesis. 2012. Trends Cell Biol., 22(10), 536-45. details
  • Maître JL, Berthoumieux H, Krens SF, Salbreux G, Jülicher F, Paluch E, Heisenberg CP. Adhesion Functions in Cell Sorting by Mechanically Coupling the Cortices of Adhering Cells. 2012. Science, 338(6104), 253-6. details
  • Bergert M, Chandradoss SD, Desai RA, Paluch E. Cell mechanics control rapid transitions between blebs and lamellipodia during migration. 2012. Proc Natl Acad Sci U S A, 109(36), 14434-9. details
  • Zerrouqi A, Pyrzynska B, Febbraio M, Brat DJ, Van Meir EG. P14ARF inhibits human glioblastoma-induced angiogenesis by upregulating the expression of TIMP3. 2012. J Clin Invest., 122(4), 1283-95. details
  • Sosnowski TR, Koliński M, Gradoń L. Alteration of surface properties of dipalmitoyl phosphatidylcholine by benzo[a]pyrene: a model of pulmonary effects of diesel exhaust inhalation. 2012. J Biomed Nanotechnol, 8(5), 818-25. details
  • Samluk L, Czeredys M, Skowronek K, Nałęcz KA. Protein kinase C regulates amino acid transporter ATB. 2012. Biochem Biophys Res Commun., 422(1), 64-9. details
  • Malenda A, Skrobanska A, Issat T, Winiarska M, Bil J, Oleszczak B, Sinski M, Firczuk M, Bujnicki JM, Chlebowska J, Staruch AD, Glodkowska-Mrowka E, Kunikowska J, Krolicki L, Szablewski L, Gaciong Z, Koziak K, Jakobisiak M, Golab J, Nowis DA. Statins Impair Glucose Uptake in Tumor Cells. 2012. Neoplasia, 14, 311-23. details
  • Lammens W, Le Roy K, Yuan S, Vergauwen R, Rabijns A, Van Laere A, Strelkov SV, Van den Ende W. Crystal structure of 6-SST/6-SFT from Pachysandra terminalis, a plant fructan biosynthesizing enzyme in complex with its acceptor substrate 6-kestose. 2012. Plant J., 70(2), 205-19. details
  • Lach G, DeKievet M, Jentschura UD. Einstein–Hopf drag, Doppler shift of thermal radiation and blackbody drag: Three perspectives on quantum friction. 2012. Cent. Eur. J. Phys., 10(4), 763-767. details
  • Goudarzi M, Banisch TU, Mobin MB, Maghelli N, Tarbashevich K, Strate I, van den Berg J, Blaser H, Bandemer S, Paluch E, Bakkers J, Tolić-Nørrelykke IM, Raz E. Identification and Regulation of a Molecular Module for Bleb-Based Cell Motility. 2012. Dev Cell, 23, 210-8. details
  • Fislage M, Roovers M, Tuszynska I, Bujnicki JM, Droogmans L, Versées W. Crystal structures of the tRNA:m(2)G6 methyltransferase Trm14/TrmN from two domains of life. 2012. Nucleic Acids Res, 40(11), 5149-61. details
  • Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, Patel DJ, Philips A, Puton T, Santalucia J, Sijenyi F, Hermann T, Rother K, Rother M, Serganov A, Skorupski M, Soltysinski T, Sripakdeevong P, Tuszynska I, Weeks KM, Waldsich C, Wildauer M, Leontis NB, Westhof E. RNA-Puzzles: A CASP-like evaluation of RNA three-dimensional structure prediction. 2012. RNA, 18, 610-25. details
  • Chojnowski G, Bujnicki JM, Bochtler M. RIBER/DIBER: a software suite for crystal content analysis in the studies of protein-nucleic acid complexes. 2012. Bioinformatics, 28(6), 880-1. details
  • Bialopiotrowicz E, Szybinska A, Kuzniewska B, Buizza L, Uberti D, Kuznicki J, Wojda U. Highly Pathogenic Alzheimer's Disease Presenilin 1 P117R Mutation Causes a specific Increase in p53 and p21 Protein Levels and Cell Cycle Dysregulation in Human Lymphocytes. 2012. J Alzheimers Dis, 32(2), 397-415. details
  • Urbanska M, Gozdz A, Swiech LJ, Jaworski J. Mammalian target of rapamycin complex 1 (MTORC1) and 2 MTORC2) control the dendritic arbor morphology of hippocampal neurons. 2012. JBC, 287(36), 30240-56. details
  • Hupalowska A, Pyrzynska B, Miaczynska M. APPL1 regulates basal NF-κB activity by stabilizing NIK. 2012. J Cell Sci, 125(Pt 17), 4090-102. details
  • Stojanovski D, Bragoszewski P, Chacinska A. The MIA pathway: A tight bond between protein transport and oxidative folding in mitochondria. 2012. BBA-MOL CELL RES, 1823(7), 1142-1150. details
  • Zylicz-Stachula A, Zolnierkiewicz O, Lubys A, Ramanauskaite D, Mitkaite G, Bujnicki JM, Skowron P. Related bifunctional restriction endonuclease-methyltransferase triplets: TspDTI, Tth111II/TthHB27I and TsoI with distinct specificities. 2012. BMC Mol Biol, 13(1), 13. details
  • Roovers M, Oudjama Y, Fislage M, Bujnicki JM, Versées W, Droogmans L. The open reading frame TTC1157 of Thermus thermophilus HB27 encodes the methyltransferase forming N2-methylguanosine at position 6 in tRNA. 2012. RNA, 18(4), 815-24. details
  • Nakagome S, Mano S, Kozlowski L, Bujnicki JM, Shibata H, Fukumaki Y, Kidd JR, Kidd KK, Kawamura S, Oota H. Crohn's Disease Risk Alleles on the NOD2 Locus Have Been Maintained by Natural Selection on Standing Variation. 2012. Mol Biol Evol, 29(6), 1569-85. details
  • Puton T, Kozlowski L, Tuszynska I, Rother K, Bujnicki JM. Computational methods for prediction of protein-RNA interactions. 2012. J Struct Biol, 179(3), 261-8. details
  • Rother K, Potrzebowski W, Puton T, Rother M, Wywial E, Bujnicki JM . A toolbox for developing bioinformatics software. 2012. Brief Bioinform, 13(2), 244-57. details
  • Hupalowska A, Miaczynska M. The new faces of endocytosis in signaling. 2012. Traffic, 13(1), 9-18. details
  • Kennaway CK, Taylor JE, Song CF, Potrzebowski W, Nicholson W, White JH, Swiderska A,Obarska-Kosinska A, Callow P, Cooper LP, Roberts GA, Artero JB,Bujnicki JM, Trinick J, Kneale GG, Dryden DT. Structure and operation of the DNA-translocating type I DNA restriction enzymes. 2012. Genes Dev, 26(1), 92-104. details
  • Philips A, Milanowska K, Lach G, Boniecki M, Rother K, Bujnicki JM. MetalionRNA: computational predictor of metal-binding sites in RNA structures. 2012. Bioinformatics, 28(2), 198-205. details
  • Tinevez JY, Salbreux G, Paluch E. The mechanics of the cellular division or how to split a sphere into two?. 2012. Med Sci (Paris), 28(2), 144-6. details
  • Trzaskowski B, Latek D, Yuan S, Ghoshdastider U, Debinski A, Filipek S. Action of Molecular Switches in GPCRs - Theoretical and Experimental Studies. 2012. Curr Med Chem, 19(8), 1090-109. details
  • Paluch E, El-Samad H. Modeling and simulation of cellular functions. 2012. Mol Biol Cell, 23(6), 972. details
  • Buizza L, Cenini G, Lanni C, Ferrari-Toninelli G, Prandelli C, Govoni S, Buoso E, Racchi M, Barcikowska M, Styczynska M, Szybinska A, Butterfield DA, Memo M, Uberti D. Conformational altered p53 as an early marker of oxidative stress in Alzheimer's disease. 2012. PLoS One, 7(1), e29789. details
  • Ziętkiewicz E, Bukowy-Bieryłło Z, Voelkel K, Klimek B, Dmeńska H, Pogorzelski A, Sulikowska-Rowińska A, Rutkiewicz E, Witt M. Mutations in radial spoke head genes and ultrastructural cilia defects in East-European cohort of primary ciliary dyskinesia patients. 2012. PLoS One, 7(3), e33667. details
  • Urbanska M, Swiech L, Jaworski J. Developmental plasticity of the dendritic compartment: focus on the cytoskeleton. 2012. Adv Exp Med Biol, 970, 265-84. details
  • Kraszewska MD, Dawidowska M, Kosmalska M, Sędek L, Grzeszczak W, Szczepański T, Witt M . DNA methylation pattern is altered in childhood T-cell acute lymphoblastic leukemia patients as compared with normal thymic subsets: insights into CpG island methylator phenotype in T-ALL. 2012. Leukemia, 26, 367–371. details
  • Kraszewska MD, Dawidowska M, Szczepanski T, Witt M . T-cell acute lymphoblastic leukaemia: recent molecular biology findings. 2012. Br J Haematol, 156(3), 303-15. details
  • Kraszewska MD, Dawidowska M, Kosmalska M, Sędek L, Grzeszczak W, Szczepański T, Witt M . Immunoglobulin/T-cell receptor gene rearrangements in the diagnostic paradigm of pediatric T-cell acute lymphoblastic leukemia patients. 2012. Leukemia & Lymphoma, 53(7), 1425-8. details
  • Ziętkiewicz E, Witt M, Daca P, Zebracka-Gala J, Goniewicz M, Jarząb B, Witt M. Current genetic methodologies in the identification of disaster victims and in forensic analysis. 2012. J Appl Genet., 53(1), 41-60. details
  • Hokkanen S, Feldmann HM, Ding H, Jung CK, Bojarski L, Renner-Müller I, Schüller U, Kretzschmar H, Wolf E, Herms J. Lack of Pur-alpha alters postnatal brain development and causes megalencephaly. 2012. Hum Mol Genet., 21(3), 473-84. details
  • 2011
  • Drozdz M, Piekarowicz A, Bujnicki JM, Radlinska M. Novel nonspecific DNA adenine methyltransferases. 2011. Nucl. Acids Res, 11(5), 497-510. details
  • Bielska E, Lucas X, Czerwoniec A, Kasprzak JM, Kaminska KH, Bujnicki JM. Virtual screening strategies in drug design - methods and applications. 2011. BioTechnologia, 92(3), 249-264. details
  • Audette GF, Lombardo S, Dudzik J, Arruda TM, Kolinski M, Filipek S, Mukerjee S, Kannan AM, Thavasi V, Ramakrishna S, Chin M, Somasundaran P, Viswanathan S, Keles RS, Renugopalakrishnan V. Modeling of ligand binding to G protein coupled receptors: cannabinoid CB(1), CB (2) and adrenergic β (2)AR.. 2011. Materials Today, 14(7-8), 360-365. details
  • Milczarski P, Bolibok-Brągoszewska H, Myśków B, Stojałowski S, Heller-Uszyńska K, Góralska M, Brągoszewski P, Uszyński G, Kilian A, Rakoczy-Trojanowska M. A high density consensus map of rye (Secale cereale L.) based on DArT markers. 2011. PLoS One, 6(12), e28495. details
  • Sikorski K, Czerwoniec A, Bujnicki JM, Wesoly J, Bluyssen HAR. STAT1 as a novel therapeutical target in pro-atherogenic signal integration of IFNg, TLR4 and IL-6 in vascular disease. 2011. Cytokine Growth Factor Rev., 22(4), 211-9. details
  • Rother M, Rother K, Puton T, Bujnicki JM. RNA tertiary structure prediction with ModeRNA. 2011. Brief Bioinform, 12(6), 601-13. details
  • Milanowska K, Rother K, Bujnicki JM. Databases and bioinformatics tools for the study of DNA repair. 2011. Mol Biol Int, 475718, . details
  • Liu J, Ganapathy K, Wywial E, Bujnicki JM, Nwogwugwu CA, Nes WD. Effect of substrate features and mutagenesis of active site tyrosine residues on the reaction course catalysed by Trypanosoma brucei sterol C-24-methyltransferase. 2011. Biochem J, 439(3), 413-22. details
  • Czerwoniec A, Bujnicki JM. Identification and modeling of a phosphatase-like domain in a tRNA 2'-O-ribosyl phosphate transferase Rit1p. 2011. Cell Cycle, 10(20), 3566-70. details
  • Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, Huang HD, Kelly KA, Kersey P, Kozomara A, Lowe TM, Marz M, Moxon S, Pruitt KD, Samuelsson T, Stadler PF, Vilella AJ, Vogel JH, Williams KP, Wright MW, Zwieb C. RNAcentral: A vision for an international database of RNA sequences. 2011. RNA, 17(11), 1941-6. details
  • Steinbeck JA, Henke N, Opatz J, Gruszczynska-Biegala J, Schneider L, Theiss S, Hamacher N, Steinfarz B, Golz S, Brüstle O, Kuznicki J, Methner A. Store-operated calcium entry modulates neuronal network activity in a model of chronic epilepsy. 2011. Exp Neurol., 232(2), 185-94. details
  • Schulz C, Lytovchenko O, Melin J, Chacinska A, Guiard B, Neumann P, Ficner R, Jahn O, Schmidt B, Rehling P. Tim50's presequence receptor domain is essential for signal driven transport across the TIM23 complex. 2011. J Cell Biol., 195(4), 643-656. details
  • von der Malsburg K, Müller JM, Bohnert M, Oeljeklaus S, Kwiatkowska P, Becker T, Loniewska-Lwowska A, Wiese S, Rao S, Milenkovic D, Hutu DP, Zerbes RM, Schulze-Specking A, Meyer HE, Martinou JC, Rospert S, Rehling P, Meisinger C, Veenhuis M et all. Dual role of mitofilin in mitochondrial membrane organization and protein biogenesis. 2011. Dev Cell., 21(4), 694-707. details
  • Antonczak AK, Simova Z, Yonemoto IT, Bochtler M, Piasecka A, Czapinska H, Brancale A, Tippmann EM. Importance of single molecular determinants in the fidelity of expanded genetic codes. 2011. Proc Natl Acad Sci U S A., 108(4), 1320-1325. details
  • Figiel M, Chon H, Cerritelli SM, Cybulska M, Crouch RJ, Nowotny M. The structural and biochemical characterization of human RNase H2 complex reveals the molecular basis for substrate recognition and Aicardi-Goutières syndrome defects. 2011. J Biol Chem, 286(12), 10540-10550. details
  • Hageman J, van Waarde MA, Zylicz A, Walerych D, Kampinga HH. The diverse members of the mammalian HSP70 machine show distinct chaperone-like activities. 2011. Biochem J, 435, 127-142. details
  • Rother M, Rother K, Puton T, Bujnicki JM. ModeRNA: a tool for comparative modeling of RNA 3D structure. 2011. Nucleic Acids Res, 39(10), 4007-4022. details
  • Braun S, Humphreys C, Fraser E, Brancale A, Bochtler M, Dale TC. Amyloid-associated nucleic acid hybridisation. 2011. PLoS One, 6(5), e19125. details
  • Werner M, Purta E, Kaminska KH, Cymerman IA, Campbell DA, Mittra B, Zamudio JR, Sturm NR, Jaworski J, Bujnicki JM. 2'-O-ribose methylation of cap2 in human: function and evolution in a horizontally mobile family. 2011. Nucleic Acids Res, 39(11), 4756-4768. details
  • Rosta E, Nowotny M, Yang W, Hummer G. Catalytic mechanism of RNA backbone cleavage by ribonuclease H from quantum mechanics/molecular mechanics simulations. 2011. J Am Chem Soc., 133(23), 8934-8941. details
  • Bledowski P, Mossakowska M, Chudek J, Grodzicki T, Milewicz A, Szybalska A, Wieczorowska-Tobis K, Wiecek A, Bartoszek A, Dabrowski A, Zdrojewski T. Medical, psychological and socioeconomic aspects of aging in Poland Assumptions and objectives of the PolSenior project. 2011. Exp Gerontol, 46(12):, 1003-9. details
  • Rajska-Neumann A, Mossakowska M, Klich-Rączka A, Życzkowska J, Grześkowiak E, Shieh S, Wieczorowska-Tobis K. Drug consumption among Polish centenarians. 2011. Arch Gerontol Geriatr, 53(1), E29-E32. details
  • Becker T, Wenz LS, Krüger V, Lehmann W, Müller JM, Goroncy L, Zufall N, Lithgow T, Guiard B, Chacinska A, Wagner R, Meisinger C, Pfanner N. The mitochondrial import protein Mim1 promotes biogenesis of multispanning outer membrane proteins. 2011. J Cell Biol., 194(3), 387-395. details
  • Tuszynska I, Bujnicki JM. DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking. 2011. BMC Bioinformatics, 12, 348. details
  • Sedzinski J, Biro M, Oswald A, Tinevez JY, Salbreux G, Paluch E. Polar actomyosin contractility destabilizes the position of the cytokinetic furrow. 2011. Nature, 476(7361), 462-U119. details
  • Urbanska A, Sadowski L, Kalaidzidis Y, Miaczynska M. Biochemical characterization of APPL endosomes: the role of annexin A2 in APPL membrane recruitment. 2011. Traffic, 12(9), 1227-1241. details
  • Rother M, Milanowska K, Puton T, Jeleniewicz J, Rother K, Bujnicki JM. ModeRNA server: an online tool for modeling RNA 3D structures. 2011. Bioinformatics, 27(17), 2441-2442. details
  • Rother K, Rother M, Boniecki M, Puton T, Bujnicki JM. RNA and protein 3D structure modeling: similarities and differences. 2011. J Mol Model., 17(9), 2325-2336. details
  • Misztal K, Wisniewska MB, Ambrozkiewicz M, Nagalski A, Kuznicki J. WNT protein-independent constitutive nuclear localization of beta-catenin protein and its low degradation rate in thalamic neurons.. 2011. J Biol Chem., 286, 31781-31788. details
  • Spears JL, Rubio MA, Gaston KW, Wywial E, Strikoudis A, Bujnicki JM, Papavasiliou FN, Alfonzo JD. A single zinc ion is sufficient for an active Trypanosoma brucei tRNA editing deaminase. 2011. J Biol Chem, 286(23), 20366-74. details
  • Tesfazgi Mebrhatu M, Wywial E, Ghosh A, Michiels CW, Lindner AB, Taddei F, Bujnicki JM, Van Melderen L, Aertsen A. Evidence for an evolutionary antagonism between Mrr and Type III modification systems.. 2011. Nucleic Acids Res, 39(14), 5991-6001. details
  • Rother K, Rother M, Boniecki M, Puton T, Tomala K, Lukasz P, Bujnicki JM. Template-based and template-free modeling of RNA 3D structure: inspirations from protein structure modeling. 2011. RNA Structure Prediction and Modelling, 27, 67-90. details
  • Kozlowski L, Orlowski J, Bujnicki JM. Structure prediction of alternatively spliced proteins. 2011. RNA splicing: The complete guide, , 582-591. details
  • Bukowy Z, Ziętkiewicz E, Witt M. In vitro culturing of ciliary respiratory cells--a model for studies of genetic diseases. 2011. J Appl Genet, 52, 39-51. details
  • Geremek M, Bruinenberg M, Ziętkiewicz E, Pogorzelski A, Witt M, Wijmenga C. Gene expression studies in cells from primary ciliary dyskinesia patients identify 208 potential ciliary genes. 2011. Hum Genet, 129, 283-93. details
  • Kapitein LC, Yau KW, Gouveia SM, van der Zwan WA, Wulf PS, Keijzer N, Demmers J, Jaworski J, Akhmanova A, Hoogenraad CC. NMDA Receptor Activation Suppresses Microtubule Growth and Spine Entry. 2011. J Neurosci, 31, 8194-209. details
  • Clark AG, Paluch E. Mechanics and regulation of cell shape during the cell cycle. 2011. Results Probl Cell Differ, 53, 31-73. details
  • Perycz M, Urbanska AS, Krawczyk PS, Parobczak K, Jaworski J. Zipcode binding protein 1 regulates the development of dendritic arbors in hippocampal neurons. 2011. J Neurosci, 31, 5271-85. details
  • Swiech L, Blazejczyk M, Urbanska M, Pietruszka P, Dortland BR, Malik AR, Wulf PS, Hoogenraad CC, Jaworski J. CLIP-170 and IQGAP1 cooperatively regulate dendrite morphology. 2011. J Neurosci, 31, 4555-68. details
  • Azoulay-Alfaguter I, Yaffe Y, Licht-Murava A, Urbanska M, Jaworski J, Pietrokovski S, Hirschberg K, Eldar-Finkelman H. Distinct molecular regulation of glycogen synthase kinase-3alpha isozyme controlled by its N-terminal region: functional role in calcium/calpain signaling. 2011. J Biol Chem, 286, 13470-80. details
  • Jaciuk M, Nowak E, Skowronek K, Tańska A, Nowotny M. Structure of UvrA nucleotide excision repair protein in complex with modified DNA.. 2011. Nat Struct Mol Biol, 18, 191-7. details
  • Pilecka I, Sadowski L, Kalaidzidis Y, Miaczynska M. Recruitment of APPL1 to ubiquitin-rich aggresomes in response to proteasomal impairment. 2011. Exp Cell Res, 317, 1093-107. details
  • Latek D, Kolinski M, Ghoshdastider U, Debinski A, Bombolewski R, Plazinska A, Jozwiak K, Filipek S. Modeling of ligand binding to G protein coupled receptors: cannabinoid CB(1), CB (2) and adrenergic β (2)AR. 2011. J Mol Model, 17(9), 2353-66. details
  • Koch R, Lipton AS, Filipek S, Renugopalakrishnan V. Arginine interactions with anatase TiO(2) (100) surface and the perturbation of (49)Ti NMR chemical shifts - a DFT investigation: relevance to Renu-Seeram bio solar cell. 2011. J Mol Model, 17, 1467-72. details
  • Gruszczynska-Biegala J, Pomorski P, Wisniewska MB, Kuznicki J. Differential Roles for STIM1 and STIM2 in Store-Operated Calcium Entry in Rat Neurons. 2011. PLoS One, 6, e19285. details
  • Sobczak A, Debowska K, Blazejczyk M, Kreutz MR, Kuznicki J, Wojda U. Calmyrin1 binds to SCG10 protein (stathmin2) to modulate neurite outgrowth. 2011. Biochim Biophys Acta, 1813, 1025-37. details
  • Bialopiotrowicz E, Kuzniewska B, Kachamakova-Trojanowska N, Barcikowska M, Kuznicki J, Wojda U. Cell cycle regulation distinguishes lymphocytes from sporadic and familial Alzheimer's disease patients. 2011. Neurobiol Aging, 32 (12), 2319.e13–2319.e26. details
  • Firczuk M, Wojciechowski M, Czapinska H, Bochtler M. DNA intercalation without flipping in the specific ThaI-DNA complex. 2011. Nucleic Acids Res, 39, 744-54. details
  • Husain N, Obranic S, Koscinski L, Seetharaman J, Babic F, Bujnicki JM, Maravic-Vlahovicek G, Sivaraman J. Structural basis for the methylation of A1408 in 16S rRNA by a panaminoglycoside resistance methyltransferase NpmA from a clinical isolate and analysis of the NpmA interactions with the 30S ribosomal subunit. 2011. Nucleic Acids Res, 39(5), 1903-18. details
  • Abrahams JP, Apweiler R, Balling R, Bertero MG, Bujnicki JM, Chayen NE, Chène P, Corthals GL, Dyląg T, Förster F, Heck AJ, Henderson PJ, Herwig R, Jehenson P, Kokalj SJ, Laue E, Legrain P, Martens L, Migliorini C, Musacchio A, Podobnik M, Schertler GF, Sc. "4D Biology for health and disease" workshop report. 2011. N Biotechnol, 28(4), 291-3. details
  • Sokolowska M, Czapinska H, Bochtler M. Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis. 2011. Nucleic Acids Res, 39(4), 1554-64. details
  • Milanowska K, Krwawicz J, Papaj G, Kosinski J, Poleszak K, Lesiak J, Osinska E, Rother K, Bujnicki JM. REPAIRtoire-a database of DNA repair pathways. 2011. Nucleic Acids Res, 39, D788-D792. details
  • 2010
  • Bhagat J, Tanoh F, Nzuobontane E, Laurent T, Orlowski J, Roos M, Wolstencroft K, Aleksejevs S, Stevens R, Pettifer S, Lopez R, Goble CA. BioCatalogue: a universal catalogue of web services for the life sciences. 2010. Nucleic Acids Res, 38(Web Server issue), W689-94. details
  • Tkaczuk KL. Trm13p, the tRNA:Xm4 modification enzyme from Saccharomyces cerevisiae is a member of the Rossmann-fold MTase superfamily: prediction of structure and active site. 2010. J Mol Model., 16(3), 599-606. details
  • Rother K, Hoffmann S, Bulik S, Hoppe A, Gasteiger J, Holzhütter HG. IGERS: inferring Gibbs energy changes of biochemical reactions from reaction similarities. 2010. Biophys J., 98(11), 2478-86. details
  • Zubrienė A, Gutkowska M, Matulienė J, Chaleckis R, Michailovienė V, Voroncova A, Venclovas C, Zylicz A, Zylicz M, Matulis D. Thermodynamics of radicicol binding to human Hsp90 alpha and beta isoforms. 2010. Biophys Chem, 152(1-3), 153-63. details
  • Kvardova V, Hrstka R, Walerych D, Muller P, Matoulkova E, Hruskova V, Stelclova D, Sova P, Vojtesek B. The new platinum(IV) derivative LA-12 shows stronger inhibitory effect on Hsp90 function compared to cisplatin. 2010. Mol Cancer, 9, 147. details
  • Czarnecka AM, Krawczyk T, Plak K, Klemba A, Zdrozny M, Arnold RS, Kofler B, Golik P, Szybinska A, Lubinski J, Mossakowska M, Bartnik E, Petros JA. Mitochondrial genotype and breast cancer predisposition. 2010. Oncol Rep, 24, 1521-34. details
  • Ziętkiewicz E, Nitka B, Voelkel K, Skrzypczak U, Bukowy Z, Rutkiewicz E, Humińska K, Przystałowska H, Pogorzelski A, Witt M. Population specificity of the DNAI1 gene mutation spectrum in primary ciliary dyskinesia (PCD).. 2010. Respir Res, 11, 174. details
  • Polosak J, Roszkowska-Gancarz M, Kurylowicz A, Owczarz M, Dobosz P, Mossakowska M, Szybinska A, Puzianowska-Kuznicka M. Decreased expression and the Lys751Gln polymorphism of the XPD gene are associated with extreme longevity. 2010. Biogerontology, 11(3), 287-97. details
  • Adler G, Parczewski M, Czerska E, Loniewska B, Kaczmarczyk M, Gumprecht J, Grzeszczak W, Szybinska A, Mossakowska M, Ciechanowicz A. An age-related decrease in factor V Leiden frequency among Polish subjects.. 2010. J Appl Genet, 51, 337-41. details
  • Klemba A, Kowalewska M, Kukwa W, Tonska K, Szybinska A, Mossakowska M, Scinska A, Golik P, Koper K, Radziszewski J, Kukwa A, Czarnecka AM, Bartnik E. Mitochondrial genotype in vulvar carcinoma - cuckoo in the nest. 2010. J Biomed Sci, 17, 73. details
  • Piechota M, Korostynski M, Solecki W, Gieryk A, Slezak M, Bilecki W, Ziolkowska B, Kostrzewa E, Cymerman I, Swiech L, Jaworski J, Przewlocki R. The dissection of transcriptional modules regulated by various drugs of abuse in the mouse striatum.. 2010. Genome Biol, 11, R48. details
  • Michowski W, Ferretti R, Wisniewska MB, Ambrozkiewicz M, Beresewicz M, Fusella F, Skibinska-Kijek A, Zablocka B, Brancaccio M, Tarone G, Kuznicki J. Morgana/CHP-1 is a novel chaperone able to protect cells from stress.. 2010. Biochim Biophys Acta, 1803, 1043-9. details
  • Wisniewska MB, Misztal K, Michowski W, Szczot M, Purta E, Lesniak W, Klejman ME, Dabrowski M, Filipkowski RK, Nagalski A, Mozrzymas JW, Kuznicki J. LEF1/beta-catenin complex regulates transcription of the Cav3.1 calcium channel gene (Cacna1g) in thalamic neurons of the adult brain.. 2010. J Neurosci, 30, 4957-69. details
  • Chojnowski G, Bochtler M. DIBER: protein, DNA or both?. 2010. Acta Crystallogr D Biol Crystallogr, 66, 643-53. details
  • Gentsch M, Kaczmarczyk A, van Leeuwen K, de Boer M, Kaus-Drobek M, Dagher MC, Kaiser P, Arkwright PD, Gahr M, Rösen-Wolff A, Bochtler M, Secord E, Britto-Williams P, Saifi GM, Maddalena A, Dbaibo G, Bustamante J, Casanova JL, Roos D, Roesler J. Alu-repeat-induced deletions within the NCF2 gene causing p67-phox-deficient chronic granulomatous disease (CGD). 2010. Hum Mutat, 31, 151-8. details
  • Chojnowski G, Breer K, Narczyk M, Wielgus-Kutrowska B, Czapinska H, Hashimoto M, Hikishima S, Yokomatsu T, Bochtler M, Girstun A, Staroń K, Bzowska A. 1.45 A resolution crystal structure of recombinant PNP in complex with a pM multisubstrate analogue inhibitor bearing one feature of the postulated transition state. 2010. Biochem Biophys Res Commun, 391, 703-8. details
  • Diz-Muñoz A, Krieg M, Bergert M, Ibarlucea-Benitez I, Muller DJ, Paluch E, Heisenberg CP. Control of directed cell migration in vivo by membrane-to-cortex attachment.. 2010. PLoS Biol, 8, e1000544. details
  • Khan F, Furuta Y, Kawai M, Kaminska KH, Ishikawa K, Bujnicki JM, Kobayashi I. A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI).. 2010. Nucleic Acids Res, 38, 3019-30. details
  • Tuszynska I, Bujnicki JM. Predicting atomic details of the unfolding pathway for YibK, a knotted protein from the SPOUT superfamily. 2010. J Biomol Struct Dyn, 27, 511-20. details
  • Kaminska KH, Purta E, Hansen LH, Bujnicki JM, Vester B, Long KS. Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria.. 2010. Nucleic Acids Res, 38, 1652-63. details
  • Zhou X, Chua TK, Tkaczuk KL, Bujnicki JM, Sivaraman J. The crystal structure of Escherichia coli spermidine synthase SpeE reveals a unique substrate-binding pocket.. 2010. J Struct Biol, 169, 277-85. details
  • Pukáncsik M, Békési A, Klement E, Hunyadi-Gulyás E, Medzihradszky KF, Kosinski J, Bujnicki JM, Alfonso C, Rivas G, Vértessy BG. Physiological truncation and domain organization of a novel uracil-DNA-degrading factor.. 2010. FEBS J, 277, 1245-59. details
  • Zhang Z, Theler D, Kaminska KH, Hiller M, de la Grange P, Pudimat R, Rafalska I, Heinrich B, Bujnicki JM, Allain FH, Stamm S. The YTH domain is a novel RNA binding domain.. 2010. J Biol Chem, 285, 14701-10. details
  • Pukszta S, Schilke B, Dutkiewicz R, Kominek J, Moczulska K, Stepien B, Reitenga KG, Bujnicki JM, Williams B, Craig EA, Marszalek J. Co-evolution-driven switch of J-protein specificity towards an Hsp70 partner.. 2010. EMBO Rep, 11, 360-5. details
  • Kempenaers M, Roovers M, Oudjama Y, Tkaczuk KL, Bujnicki JM, Droogmans L. New archaeal methyltransferases forming 1-methyladenosine or 1-methyladenosine and 1-methylguanosine at position 9 of tRNA.. 2010. Nucleic Acids Res, 38, 6533-43. details
  • Husain N, Tkaczuk KL, Tulsidas SR, Kaminska KH, Cubrilo S, Maravić-Vlahovicek G, Bujnicki JM, Sivaraman J. Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases.. 2010. Nucleic Acids Res, 38, 4120-32. details
  • Kosinski J, Hinrichsen I, Bujnicki JM, Friedhoff P, Plotz G. Identification of Lynch syndrome mutations in the MLH1-PMS2 interface that disturb dimerization and mismatch repair.. 2010. Hum Mutat, 31, 975-82. details
  • Chua TK, Seetharaman J, Kasprzak JM, Ng C, Patel BK, Love C, Bujnicki JM, Sivaraman J. Crystal structure of a fructokinase homolog from Halothermothrix orenii. 2010. J Struct Biol, 171, 397-401. details
  • Gajda MJ, Tuszynska I, Kaczor M, Bakulina AY, Bujnicki JM. FILTREST3D: discrimination of structural models using restraints from experimental data.. 2010. Bioinformatics, 26, 2986-7. details
  • Kieper J, Lauber C, Gimadutdinow O, Urbańska A, Cymerman I, Ghosh M, Szczesny B, Meiss G. Production and characterization of recombinant protein preparations of Endonuclease G-homologs from yeast, C. elegans and humans.. 2010. Protein Expr Purif, 73, 99-106. details
  • Stefaniuk M, Swiech L, Dzwonek J, Lukasiuk K. Expression of Ttyh1, a member of the Tweety family in neurons in vitro and in vivo and its potential role in brain pathology.. 2010. J Neurochem, 115, 1183-94. details
  • Rychlik MP, Chon H, Cerritelli SM, Klimek P, Crouch RJ, Nowotny M. Crystal structures of RNase H2 in complex with nucleic acid reveal the mechanism of RNA-DNA junction recognition and cleavage.. 2010. Mol Cell, 40, 658-70. details
  • Miaczynska M, Bar-Sagi D. Signaling endosomes: seeing is believing. 2010. Curr Opin Cell Biol, 22, 535-40. details
  • Kolinski M, Filipek S. Study of a structurally similar kappa opioid receptor agonist and antagonist pair by molecular dynamics simulations.. 2010. J Mol Model, 16, 1567-76. details
  • Sobhanifar S, Schneider B, Löhr F, Gottstein D, Ikeya T, Mlynarczyk K, Pulawski W, Ghoshdastider U, Kolinski M, Filipek S, Güntert P, Bernhard F, Dötsch V. Structural investigation of the C-terminal catalytic fragment of presenilin 1. 2010. Proc Natl Acad Sci U S A, 107, 9644-9. details
  • Nagalski A, Kiersztan A.. Fizjologia i molekularny mechanizm działania glikokortykoidów. 2010. Postepy Hig Med Dosw, 64, 133-145. details
  • Spooren A, Rondou P, Debowska K, Lintermans B, Vermeulen L, Samyn B, Skieterska K, Debyser G, Devreese B, Vanhoenacker P, Wojda U, Haegeman G, Van Craenenbroeck K. Resistance of the dopamine D4 receptor to agonist-induced internalization and degradation.. 2010. Cell Signal, 22, 600-9. details
  • Uberti D, Cenini G, Bonini SA, Barcikowska M, Styczynska M, Szybinska A, Memo M. Increased CD44 gene expression in lymphocytes derived from Alzheimer disease patients.. 2010. Neurodegener Dis, 7, 143-7. details
  • Bojarski L, Debowska K, Wojda U. In vitro findings of alterations in intracellular calcium homeostasis in schizophrenia.. 2010. Prog Neuropsychopharmacol Biol Psychiatry, 34, 1367-74. details
  • Piano D, El Alaoui S, Korza HJ, Filipek R, Sabala I, Haniewicz P, Buechel C, De Sanctis D, Bochtler M. Crystallization of the Photosystem II core complex and its chlorophyll binding subunit CP43 from transplastomic plants of Nicotiana tabacum. 2010. Photosynth Res, 39(4), 221-6. details
  • Kirkegaard T, Roth AG, Petersen NH, Mahalka AK, Olsen OD, Moilanen I, Zylicz A, Knudsen J, Sandhoff K, Arenz C, Kinnunen PK, Nylandsted J, Jäättelä M. Hsp70 stabilizes lysosomes and reverts Niemann-Pick disease-associated lysosomal pathology.. 2010. Nature, 463, 549-53. details
  • Zurawska A, Urbanski J, Matuliene J, Baraniak J, Klejman MP, Filipek S, Matulis D, Bieganowski P. Mutations that increase both Hsp90 ATPase activity in vitro and Hsp90 drug resistance in vivo.. 2010. Biochim Biophys Acta, 1803, 575-83. details
  • Walerych D, Gutkowska M, Klejman MP, Wawrzynow B, Tracz Z, Wiech M, Zylicz M, Zylicz A. ATP binding to Hsp90 is sufficient for effective chaperoning of p53 protein.. 2010. J Biol Chem, 285, 32020-8. details
  • 2009
  • Ohya T, Miaczynska M, Coskun U, Lommer B, Runge A, Drechsel D, Kalaidzidis Y, Zerial M. Reconstitution of Rab- and SNARE-dependent membrane fusion by synthetic endosomes.. 2009. Nature, 459, 1091-7. details
  • Olchowik M, Miaczyńska M. [Effectors of GTPase Rab5 in endocytosis and signal transduction]. 2009. Postepy Biochem, 55, 171-80. details
  • Banach-Orlowska M, Pilecka I, Torun A, Pyrzynska B, Miaczynska M. Functional characterization of the interactions between endosomal adaptor protein APPL1 and the NuRD co-repressor complex. 2009. Biochem J, 423, 389-400. details
  • Sadowski L, Pilecka I, Miaczynska M. Signaling from endosomes: location makes a difference.. 2009. Exp Cell Res, 315, 1601-9. details
  • M. Kolinfski, S. Filipek. Studies of the Activation Steps Concurrent to Ligand Binding in δOR and κOR Opioid Receptors Based on Molecular Dynamics Simulations. 2009. TOSBJ, 3, 51-63. details
  • Kilanczyk E, Filipek S, Jastrzebska B, Filipek A. CacyBP/SIP binds ERK1/2 and affects transcriptional activity of Elk-1. 2009. Biochem Biophys Res Commun, 380, 54-9. details
  • Austermann J, Nazmi AR, Heil A, Fritz G, Kolinski M, Filipek S, Gerke V. Generation and characterization of a novel, permanently active S100P mutant.. 2009. Biochim Biophys Acta, 1793, 1078-85. details
  • Thavasi V, Lazarova T, Filipek S, Kolinski M, Querol E, Kumar A, Ramakrishna S, Padrós E, Renugopalakrishnan V. Study on the feasibility of bacteriorhodopsin as bio-photosensitizer in excitonic solar cell: a first report.. 2009. J Nanosci Nanotechnol, 9, 1679-87. details
  • Kannan AM, Renugopalakrishnan V, Filipek S, Li P, Audette GF, Munukutla L. Bio-batteries and bio-fuel cells: leveraging on electronic charge transfer proteins.. 2009. J Nanosci Nanotechnol, 9, 1665-78. details
  • V. Renugopalakrishnan, A. M. Kannan, S. Srinivasan, V. Thavasi, S. Ramakrishna, P. Li, A. Mershin, S. Filipek, A. Kumar, J. Dutta, A. Jaya, L. Munukutla, S. Velumani, G. F. Audette. “Nanomaterials for Energy Convertion Applications”. 2009. \"Nanomaterials for Energy Storage Applications\", , 155-178. details
  • S. Filipek. “Bioinformatyka strukturalna białek transbłonowych”. 2009. Kosmos, 58, 57-66. details
  • Klejman ME, Gruszczynska-Biegala J, Skibinska-Kijek A, Wisniewska MB, Misztal K, Blazejczyk M, Bojarski L, Kuznicki J. Expression of STIM1 in brain and puncta-like co-localization of STIM1 and ORAI1 upon depletion of Ca(2+) store in neurons.. 2009. Neurochem Int, 54, 49-55. details
  • Skibinska-Kijek A, Wisniewska MB, Gruszczynska-Biegala J, Methner A, Kuznicki J. Immunolocalization of STIM1 in the mouse brain.. 2009. Acta Neurobiol Exp (Wars), 69, 413-28. details
  • Bojarski L, Pomorski P, Szybinska A, Drab M, Skibinska-Kijek A, Gruszczynska-Biegala J, Kuznicki J. Presenilin-dependent expression of STIM proteins and dysregulation of capacitative Ca2+ entry in familial Alzheimer's disease.. 2009. Biochim Biophys Acta, 1793, 1050-7. details
  • Sokolowska M, Czapinska H, Bochtler M. Crystal structure of the beta beta alpha-Me type II restriction endonuclease Hpy99I with target DNA. 2009. Nucleic Acids Res, 37, 3799-810. details
  • Majorek KA, Bujnicki JM. Modeling of Escherichia coli Endonuclease V structure in complex with DNA.. 2009. J Mol Model, 15, 173-82. details
  • Fink G, Hajdo L, Skowronek KJ, Reuther C, Kasprzak AA, Diez S. The mitotic kinesin-14 Ncd drives directional microtubule-microtubule sliding.. 2009. Nat Cell Biol, 11, 717-23. details
  • Czerwoniec A, Dunin-Horkawicz S, Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Grosjean H, Rother K. MODOMICS: a database of RNA modification pathways. 2008 update. 2009. Nucleic Acids Res, 37, D118-21. details
  • Nakonieczna J, Kaczorowski T, Obarska-Kosinska A, Bujnicki JM. Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymes.. 2009. Appl Environ Microbiol, 75, 212-23. details
  • Kennaway CK, Obarska-Kosinska A, White JH, Tuszynska I, Cooper LP, Bujnicki JM, Trinick J, Dryden DT. The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein. 2009. Nucleic Acids Res, 37, 762-70. details
  • Pierechod M, Nowak A, Saari A, Purta E, Bujnicki JM, Konieczny I. Conformation of a plasmid replication initiator protein affects its proteolysis by ClpXP system. 2009. Protein Sci, 18, 637-49. details
  • Matsumoto Y, Oota H, Asaoka Y, Nishina H, Watanabe K, Bujnicki JM, Oda S, Kawamura S, Mitani H. Medaka: a promising model animal for comparative population genomics.. 2009. BMC Res Notes, 2, 88. details
  • Bauer RA, Rother K, Moor P, Reinert K, Steinke T, Bujnicki JM. Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors. 2009. Algorithms, 2(2), 692-709. details
  • Purta E, O'Connor M, Bujnicki JM, Douthwaite S. YgdE is the 2'-O-ribose methyltransferase RlmM specific for nucleotide C2498 in bacterial 23S rRNA.. 2009. Mol Microbiol, 72, 1147-58. details
  • Pawłowski M, Lasica AM, Jagusztyn-Krynicka EK, Bujnicki JM. AAN82231 protein from uropathogenic E. coli CFT073 is a close paralog of DsbB enzymes and does not belong to the DsbI family. 2009. Pol J Microbiol, 58, 181-4. details
  • Zylicz-Stachula A, Bujnicki JM, Skowron PM. Cloning and analysis of a bifunctional methyltransferase/restriction endonuclease TspGWI, the prototype of a Thermus sp. enzyme family.. 2009. BMC Mol Biol, 10, 52. details
  • Palfi Z, Jaé N, Preusser C, Kaminska KH, Bujnicki JM, Lee JH, Günzl A, Kambach C, Urlaub H, Bindereif A. SMN-assisted assembly of snRNP-specific Sm cores in trypanosomes.. 2009. Genes Dev, 23, 1650-64. details
  • Pena V, Jovin SM, Fabrizio P, Orlowski J, Bujnicki JM, Lührmann R, Wahl MC. Common design principles in the spliceosomal RNA helicase Brr2 and in the Hel308 DNA helicase.. 2009. Mol Cell, 35, 454-66. details
  • Kolmos E, Nowak M, Werner M, Fischer K, Schwarz G, Mathews S, Schoof H, Nagy F, Bujnicki JM, Davis SJ. Integrating ELF4 into the circadian system through combined structural and functional studies.. 2009. HFSP J, 3, 350-66. details
  • Leski TA, Caswell CC, Pawlowski M, Klinke DJ, Bujnicki JM, Hart SJ, Lukomski S. Identification and classification of bcl genes and proteins of Bacillus cereus group organisms and their application in Bacillus anthracis detection and fingerprinting.. 2009. Appl Environ Microbiol, 75, 7163-72. details
  • Szymańska Z, Urbański J, Marciniak-Czochra A. Mathematical modelling of the influence of heat shock proteins on cancer invasion of tissue.. 2009. J Math Biol, 58, 819-44. details
  • Walerych D, Olszewski MB, Gutkowska M, Helwak A, Zylicz M, Zylicz A. Hsp70 molecular chaperones are required to support p53 tumor suppressor activity under stress conditions.. 2009. Oncogene, 28, 4284-94. details
  • Narayan V, Eckert M, Zylicz A, Zylicz M, Ball KL. Cooperative regulation of the interferon regulatory factor-1 tumor suppressor protein by core components of the molecular chaperone machinery. 2009. J Biol Chem, 284, 25889-99. details
  • Jaworski J, Kapitein LC, Gouveia SM, Dortland BR, Wulf PS, Grigoriev I, Camera P, Spangler SA, Di Stefano P, Demmers J, Krugers H, Defilippi P, Akhmanova A, Hoogenraad CC. Dynamic microtubules regulate dendritic spine morphology and synaptic plasticity.. 2009. Neuron, 61, 85-100. details
  • Blazejczyk M, Sobczak A, Debowska K, Wisniewska MB, Kirilenko A, Pikula S, Jaworski J, Kuznicki J, Wojda U. Biochemical characterization and expression analysis of a novel EF-hand Ca2+ binding protein calmyrin2 (Cib2) in brain indicates its function in NMDA receptor mediated Ca2+ signaling.. 2009. Arch Biochem Biophys, 487, 66-78. details
  • Nowotny M, Yang W. Structural and functional modules in RNA interference. 2009. Curr Opin Struct Biol, 19, 286-93. details
  • Nowotny M. Retroviral integrase superfamily: the structural perspective.. 2009. EMBO Rep, 10, 144-51. details
  • Rashid S, Pilecka I, Torun A, Olchowik M, Bielinska B, Miaczynska M. Endosomal adaptor proteins APPL1 and APPL2 are novel activators of beta-catenin/TCF-mediated transcription.. 2009. J Biol Chem, 284, 18115-28. details
  • Pyrzynska B, Pilecka I, Miaczynska M. Endocytic proteins in the regulation of nuclear signaling, transcription and tumorigenesis. 2009. Mol Oncol, 3, 321-38. details
  • Park PS, Sapra KT, Jastrzebska B, Maeda T, Maeda A, Pulawski W, Kono M, Lem J, Crouch RK, Filipek S, Müller DJ, Palczewski K. Modulation of molecular interactions and function by rhodopsin palmitylation. 2009. Biochemistry, 48, 4294-304. details
  • J.S. Jaworski, A. Kosson, S. Filipek, M. Kolinski, D. Kuck. Properties of Radical Anions of Triptindanones and Indanones: Electronic Communication and Stability of Ion Pairs Containing Lithium Cations. 2009. J. Phys. Chem. C, 113 (17), 7436-7442. details
  • Puzianowska-Kuznicka M, Kuznicki J.. The ER and ageing II: calcium homeostasis. 2009. Ageing Res Rev, 8(3), 160-72. details
  • Wawrzynow B, Pettersson S, Zylicz A, Bramham J, Worrall E, Hupp TR, Ball KL. A function for the RING finger domain in the allosteric control of MDM2 conformation and activity.. 2009. J Biol Chem, 284, 11517-30. details
  • Szymańska Z, Zylicz M. Mathematical modeling of heat shock protein synthesis in response to temperature change.. 2009. J Theor Biol, 259, 562-9. details
  • 2008
  • Geremek M, Schoenmaker F, Zietkiewicz E, Pogorzelski A, Diehl S, Wijmenga C, Witt M. Sequence analysis of 21 genes located in the Kartagener syndrome linkage region on chromosome 15q.. 2008. Eur J Hum Genet, 16, 688-95. details
  • Dawidowska M, Jółkowska J, Szczepański T, Derwich K, Wachowiak J, Witt M. Implementation of the standard strategy for identification of Ig/TCR targets for minimal residual disease diagnostics in B-cell precursor ALL pediatric patients: Polish experience.. 2008. Arch Immunol Ther Exp (Warsz), 56, 409-18. details
  • Tomat E, Nolan EM, Jaworski J, Lippard SJ. Organelle-specific zinc detection using zinpyr-labeled fusion proteins in live cells. 2008. J Am Chem Soc, 130, 15776-7. details
  • Rylski M, Amborska R, Zybura K, Mioduszewska B, Michaluk P, Jaworski J, Kaczmarek L. Yin Yang 1 is a critical repressor of matrix metalloproteinase-9 expression in brain neurons. 2008. J Biol Chem, 283, 35140-53. details
  • Jaworski J, Hoogenraad CC, Akhmanova A. Microtubule plus-end tracking proteins in differentiated mammalian cells.. 2008. Int J Biochem Cell Biol, 40, 619-37. details
  • Swiech L, Perycz M, Malik A, Jaworski J. Role of mTOR in physiology and pathology of the nervous system. 2008. Biochim Biophys Acta, 1784, 116-32. details
  • Macias M. Injury induced dendritic plasticity in the mature central nervous system.. 2008. Acta Neurobiol Exp (Wars), 68, 334-46. details
  • Urbanska M, Blazejczyk M, Jaworski J. Molecular basis of dendritic arborization. 2008. Acta Neurobiol Exp (Wars), 68, 264-88. details
  • Mioduszewska B, Jaworski J, Szklarczyk AW, Klejman A, Kaczmarek L. Inducible cAMP early repressor (ICER)-evoked delayed neuronal death in the organotypic hippocampal culture. 2008. J Neurosci Res, 86, 61-70. details
  • Kubiak JZ, Ciemerych MA, Hupalowska A, Sikora-Polaczek M, Polanski Z. On the transition from the meiotic to mitotic cell cycle during early mouse development.. 2008. Int J Dev Biol, 52, 201-17. details
  • Miaczynska M, Stenmark H. Mechanisms and functions of endocytosis.. 2008. J Cell Biol, 180, 7-11. details
  • Kolinski M, Filipek S.. Molecular dynamics of mu opioid receptor complexes with agonists and antagonists. 2008. The Open Struct. Biol. J., 2, 8-20. details
  • Jozwiak K, Krzysko KA, Bojarski L, Gacia M, Filipek S. Molecular models of the interface between anterior pharynx-defective protein 1 (APH-1) and presenilin involving GxxxG motifs. 2008. ChemMedChem, 3, 627-34. details
  • Bhatia P, Kolinski M, Moaddel R, Jozwiak K, Wainer IW. Determination and modelling of stereoselective interactions of ligands with drug transporters: a key dimension in the understanding of drug disposition. 2008. Xenobiotica, 38, 656-75. details
  • Stephen R, Filipek S, Palczewski K, Sousa MC. Ca2+ -dependent regulation of phototransduction.. 2008. Photochem Photobiol, 84, 903-10. details
  • Majewski T, Lee S, Jeong J, Yoon DS, Kram A, Kim MS, Tuziak T, Bondaruk J, Lee S, Park WS, Tang KS, Chung W, Shen L, Ahmed SS, Johnston DA, Grossman HB, Dinney CP, Zhou JH, Harris RA, Snyder C, Filipek S, Narod SA, Watson P, Lynch HT, Gazdar A, Bar-Eli M,. Understanding the development of human bladder cancer by using a whole-organ genomic mapping strategy.. 2008. Lab Invest, 88, 694-721. details
  • Erickson RP, Larson-Thomé K, Weberg L, Szybinska A, Mossakowska M, Styczynska M, Barcikowska M, Kuznicki J. Variation in NPC1, the gene encoding Niemann-Pick C1, a protein involved in intracellular cholesterol transport, is associated with Alzheimer disease and/or aging in the Polish population.. 2008. Neurosci Lett, 447, 153-7. details
  • Winiarska M, Bil J, Wilczek E, Wilczynski GM, Lekka M, Engelberts PJ, Mackus WJ, Gorska E, Bojarski L, Stoklosa T, Nowis D, Kurzaj Z, Makowski M, Glodkowska E, Issat T, Mrowka P, Lasek W, Dabrowska-Iwanicka A, Basak GW, Wasik M, Warzocha K, Sinski M, Gaci. Statins impair antitumor effects of rituximab by inducing conformational changes of CD20.. 2008. PLoS Med, 5, e64. details
  • Mossakowska M, Barcikowska M, Broczek K, Grodzicki T, Klich-Raczka A, Kupisz-Urbanska M, Podsiadly-Marczykowska T, Sikora E, Szybinska A, Wieczorowska-Tobis K, Zyczkowska J, Kuznicki J. Polish Centenarians Programme. Multidisciplinary studies of successful ageing: aims, methods, and preliminary results.. 2008. Exp Gerontol, 43, 238-44. details
  • Bojarski L, Herms J, Kuznicki J. Calcium dysregulation in Alzheimer's disease. 2008. Neurochem Int, 52, 621-33. details
  • Wojda U, Salinska E, Kuznicki J. Calcium ions in neuronal degeneration. 2008. IUBMB Life, 60, 575-90. details
  • Lanni C, Racchi M, Mazzini G, Ranzenigo A, Polotti R, Sinforiani E, Olivari L, Barcikowska M, Styczynska M, Kuznicki J, Szybinska A, Govoni S, Memo M, Uberti D. Conformationally altered p53: a novel Alzheimer's disease marker?. 2008. Mol Psychiatry, 13, 641-7. details
  • Zabka M, Leśniak W, Prus W, Kuźnicki J, Filipek A. Sgt1 has co-chaperone properties and is up-regulated by heat shock.. 2008. Biochem Biophys Res Commun, 370, 179-83. details
  • Filipek A, Michowski W, Kuznicki J. Involvement of S100A6 (calcyclin) and its binding partners in intracellular signaling pathways. 2008. Adv Enzyme Regul, 48, 225-39. details
  • Blazejczyk M, Wojda U. Factfile: Calmyrin 1 (review). 2008. Calcium Binding Proteins, 3, 1-3. details
  • Szczepanowski RH, Carpenter MA, Czapinska H, Zaremba M, Tamulaitis G, Siksnys V, Bhagwat AS, Bochtler M. Central base pair flipping and discrimination by PspGI. 2008. Nucleic Acids Res, 36, 6109-17. details
  • Tamulaitis G, Zaremba M, Szczepanowski RH, Bochtler M, Siksnys V. How PspGI, catalytic domain of EcoRII and Ecl18kI acquire specificities for different DNA targets. 2008. Nucleic Acids Res, 36, 6101-8. details
  • Breer K, Wielgus-Kutrowska B, Hashimoto M, Hikishima S, Yokomatsu T, Szczepanowski RH, Bochtler M, Girstun A, Starón K, Bzowska A. Thermodynamic studies of interactions of calf spleen PNP with acyclic phosphonate inhibitors. 2008. Nucleic Acids Symp Ser (Oxf), , 663-4. details
  • Sukackaite R, Grazulis S, Bochtler M, Siksnys V.. The recognition domain of the BpuJI restriction endonuclease in complex with cognate DNA at 1.3-A resolution. 2008. J Mol Biol, 378(5), 1084-93. details
  • Lipka M, Filipek R, Bochtler M. Crystal structure and mechanism of the Staphylococcus cohnii virginiamycin B lyase (Vgb). 2008. Biochemistry, 47, 4257-65. details
  • Maravić Vlahovicek G, Cubrilo S, Tkaczuk KL, Bujnicki JM. Modeling and experimental analyses reveal a two-domain structure and amino acids important for the activity of aminoglycoside resistance methyltransferase Sgm.. 2008. Biochim Biophys Acta, 1784, 582-90. details
  • Vasu K, Saravanan M, Bujnicki JM, Nagaraja V. Structural integrity of the beta beta alpha-Metal finger motif is required for DNA binding and stable protein-DNA complex formation in R.KpnI.. 2008. Biochim Biophys Acta, 1784, 269-75. details
  • Kaminska KH, Baraniak U, Boniecki M, Nowaczyk K, Czerwoniec A, Bujnicki JM. Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms(2)io(6)A37 in tRNA.. 2008. Proteins, 70, 1-18. details
  • Roovers M, Oudjama Y, Kaminska KH, Purta E, Caillet J, Droogmans L, Bujnicki JM. Sequence-structure-function analysis of the bifunctional enzyme MnmC that catalyses the last two steps in the biosynthesis of hypermodified nucleoside mnm5s2U in tRNA.. 2008. Proteins, 71, 2076-85. details
  • Kaminska KH, Bujnicki JM. Bacteriophage Mu Mom protein responsible for DNA modification is a new member of the acyltransferase superfamily.. 2008. Cell Cycle, 7, 120-1. details
  • Mittra B, Zamudio JR, Bujnicki JM, Stepinski J, Darzynkiewicz E, Campbell DA, Sturm NR. The TbMTr1 spliced leader RNA cap 1 2'-O-ribose methyltransferase from Trypanosoma brucei acts with substrate specificity. 2008. J Biol Chem, 283, 3161-72. details
  • Feder M, Purta E, Koscinski L, Cubrilo S, Maravic Vlahovicek G, Bujnicki JM. Virtual screening and experimental verification to identify potential inhibitors of the ErmC methyltransferase responsible for bacterial resistance against macrolide antibiotics.. 2008. ChemMedChem, 3, 316-22. details
  • Bhagwat AS, Carpenter MA, Bujnicki JM. Is AID a monomer in solution?. 2008. DNA Repair (Amst), 7, 349-50; author reply 351-2. details
  • Cymerman IA, Chung I, Beckmann BM, Bujnicki JM, Meiss G. EXOG, a novel paralog of Endonuclease G in higher eukaryotes.. 2008. Nucleic Acids Res, 36, 1369-79. details
  • Sen TZ, Kloster M, Jernigan RL, Kolinski A, Bujnicki JM, Kloczkowski A. Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA.. 2008. Biophys J, 94, 2482-91. details
  • Chua TK, Bujnicki JM, Tan TC, Huynh F, Patel BK, Sivaraman J. The structure of sucrose phosphate synthase from Halothermothrix orenii reveals its mechanism of action and binding mode.. 2008. Plant Cell, 20, 1059-72. details
  • Roovers M, Kaminska KH, Tkaczuk KL, Gigot D, Droogmans L, Bujnicki JM. The YqfN protein of Bacillus subtilis is the tRNA: m1A22 methyltransferase (TrmK).. 2008. Nucleic Acids Res, 36, 3252-62. details
  • Orlowski J, Bujnicki JM. Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses.. 2008. Nucleic Acids Res, 36, 3552-69. details
  • White J, Li Z, Sardana R, Bujnicki JM, Marcotte EM, Johnson AW. Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits.. 2008. Mol Cell Biol, 28, 3151-61. details
  • Kosinski J, Plotz G, Guarné A, Bujnicki JM, Friedhoff P. The PMS2 subunit of human MutLalpha contains a metal ion binding domain of the iron-dependent repressor protein family.. 2008. J Mol Biol, 382, 610-27. details
  • Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Douthwaite S. YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA.. 2008. RNA, 14, 2234-44. details
  • Pawlowski M, Gajda MJ, Matlak R, Bujnicki JM. MetaMQAP: a meta-server for the quality assessment of protein models.. 2008. BMC Bioinformatics, 9, 403. details
  • Sunita S, Tkaczuk KL, Purta E, Kasprzak JM, Douthwaite S, Bujnicki JM, Sivaraman J. Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes.. 2008. J Mol Biol, 383, 652-66. details
  • Obarska-Kosinska A, Taylor JE, Callow P, Orlowski J, Bujnicki JM, Kneale GG. HsdR subunit of the type I restriction-modification enzyme EcoR124I: biophysical characterisation and structural modelling.. 2008. J Mol Biol, 376, 438-52. details
  • Purta E, O\'Connor M, Bujnicki JM, Douthwaite S. YccW is the m5C methyltransferase specific for 23S rRNA nucleotide 1962. 2008. J Mol Biol, 383, 641-51. details
  • Gyrd-Hansen M, Darding M, Miasari M, Santoro MM, Zender L, Xue W, Tenev T, da Fonseca PC, Zvelebil M, Bujnicki JM, Lowe S, Silke J, Meier P. IAPs contain an evolutionarily conserved ubiquitin-binding domain that regulates NF-kappaB as well as cell survival and oncogenesis.. 2008. Nat Cell Biol, 10, 1309-17. details
  • Orlowski J, Mebrhatu MT, Michiels CW, Bujnicki JM, Aertsen A. Mutational analysis and a structural model of methyl-directed restriction enzyme Mrr.. 2008. Biochem Biophys Res Commun, 377, 862-6. details
  • Guranowski A, Wojdyła AM, Pietrowska-Borek M, Bieganowski P, Khurs EN, Cliff MJ, Blackburn GM, Błaziak D, Stec WJ. Fhit proteins can also recognize substrates other than dinucleoside polyphosphates.. 2008. FEBS Lett, 582, 3152-8. details
  • Sbroggiò M, Ferretti R, Percivalle E, Gutkowska M, Zylicz A, Michowski W, Kuznicki J, Accornero F, Pacchioni B, Lanfranchi G, Hamm J, Turco E, Silengo L, Tarone G, Brancaccio M. The mammalian CHORD-containing protein melusin is a stress response protein interacting with Hsp90 and Sgt1.. 2008. FEBS Lett, 582, 1788-94. details
  • Stevens C, Pettersson S, Wawrzynow B, Wallace M, Ball K, Zylicz A, Hupp TR. ATP stimulates MDM2-mediated inhibition of the DNA-binding function of E2F1.. 2008. FEBS J, 275, 4875-86. details
  • Zurawska A, Urbanski J, Bieganowski P. Hsp90n - An accidental product of a fortuitous chromosomal translocation rather than a regular Hsp90 family member of human proteome. 2008. Biochim Biophys Acta, 1784, 1844-6. details
  • 2007
  • Kołłajtis-Dołowy A, Pietruszka B, Kałuza J, Pawlińiska-Chmara R, Broczek K, Mossakowska M. The nutritional habits among centenarians living in Warsaw. 2007. Rocz Panstw Zakl Hig, 58, 279-86. details
  • Baranowska B, Wolinska-Witort E, Bik W, Baranowska-Bik A, Martynska L, Broczek K, Mossakowska M, Chmielowska M. Evaluation of neuroendocrine status in longevity. 2007. Neurobiol Aging, 28, 774-83. details
  • Wojda A, Zietkiewicz E, Witt M. Effects of age and gender on micronucleus and chromosome nondisjunction frequencies in centenarians and younger subjects.. 2007. Mutagenesis, 22, 195-200. details
  • Jaworski J. ARF6 in the nervous system.. 2007. Eur J Cell Biol, 86, 513-24. details
  • Michaluk P, Kolodziej L, Mioduszewska B, Wilczynski GM, Dzwonek J, Jaworski J, Gorecki DC, Ottersen OP, Kaczmarek L. Beta-dystroglycan as a target for MMP-9, in response to enhanced neuronal activity.. 2007. J Biol Chem, 282, 16036-41. details
  • Okulski P, Jay TM, Jaworski J, Duniec K, Dzwonek J, Konopacki FA, Wilczynski GM, Sánchez-Capelo A, Mallet J, Kaczmarek L. TIMP-1 abolishes MMP-9-dependent long-lasting long-term potentiation in the prefrontal cortex.. 2007. Biol Psychiatry, 62, 359-62. details
  • Pilecka I, Banach-Orlowska M, Miaczynska M. Nuclear functions of endocytic proteins. 2007. Eur J Cell Biol, 86, 533-47. details
  • Golan MP, Styczyńska M, Jóźwiak K, Walecki J, Maruszak A, Pniewski J, Lugiewicz R, Filipek S, Zekanowski C, Barcikowska M. Early-onset Alzheimer's disease with a de novo mutation in the presenilin 1 gene. 2007. Exp Neurol, 208, 264-8. details
  • Krzysko KA, Kolinski M, Filipek S.. Molecular modelling of the complex of oligomeric rhodopsin and its G protein.. 2007. J Phys Condens Matter, 19, 285204. details
  • Lee S, Jeong J, Majewski T, Scherer SE, Kim MS, Tuziak T, Tang KS, Baggerly K, Grossman HB, Zhou JH, Shen L, Bondaruk J, Ahmed SS, Samanta S, Spiess P, Wu X, Filipek S, McConkey D, Bar-Eli M, Issa JP, Benedict WF, Czerniak B. Forerunner genes contiguous to RB1 contribute to the development of in situ neoplasia.. 2007. Proc Natl Acad Sci U S A, 104, 13732-7. details
  • Park PS, Sapra KT, Koliński M, Filipek S, Palczewski K, Muller DJ. Stabilizing effect of Zn2+ in native bovine rhodopsin. 2007. J Biol Chem, 282, 11377-85. details
  • Bojarski L, Lewandowicz A, Blazejczyk M, Sobczak A, Kuznicki J, Wojda U. Biochemical properties of endogenous presenilin 1 and presenilin 2 in cultured human B-lymphocytes. 2007. Clin Chem Lab Med, 45, 1273-6. details
  • Leśniak W, Słomnicki ŁP, Kuźnicki J. Epigenetic control of the S100A6 (calcyclin) gene expression. 2007. J Invest Dermatol, 127, 2307-14. details
  • Schneider G, Nieznanski K, Kilanczyk E,Bieganowski P, Kuznicki J, Filipek A. CacyBP/SIP interacts with tubulin in neuroblastoma NB2a cells and induces formation of globular tubulin assemblies. 2007. Biochim Biophys Acta, 1773, 1628-36. details
  • Spiechowicz M, Zylicz A, Bieganowski P, Kuznicki J,Filipek A. Hsp70 is a new target of Sgt1-an interaction modulated by S100A6. 2007. Biochem Biophys Res Commun, 357, 1148-53. details
  • Wollmer MA, Sleegers K, Ingelsson M, Zekanowski C, Brouwers N, Maruszak A, Brunner F, Huynh KD, Kilander L, Brundin RM, Hedlund M, Giedraitis V, Glaser A, Engelborghs S, De Deyn PP, Kapaki E, Tsolaki M, Daniilidou M, Molyva D, Paraskevas GP, Thal DR, Barc. Association study of cholesterol-related genes in Alzheimer's disease. 2007. Neurogenetics, 8, 179-88. details
  • Bochtler M, Chojnowski G. The highest reflection intensity in a resolution shell. 2007. Acta Crystallogr A, 63, 146-55. details
  • Chojnowski G, Bochtler M. The statistics of the highest E value. 2007. Acta Crystallogr A, 63, 297-305. details
  • Firczuk M, Bochtler M. Folds and activities of peptidoglycan amidases. 2007. FEMS Microbiol Rev, 31, 676-91. details
  • Firczuk M, Bochtler M. Mutational analysis of peptidoglycan amidase MepA. 2007. Biochemistry, 46, 120-8. details
  • Kaus-Drobek M, Czapinska H, Sokołowska M, Tamulaitis G, Szczepanowski RH, Urbanke C, Siksnys V, Bochtler M. Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically. 2007. Nucleic Acids Res, 35, 2035-46. details
  • Sokolowska M, Kaus-Drobek M, Czapinska H, Tamulaitis G, Siksnys V, Bochtler M . Restriction endonucleases that resemble a component of the bacterial DNA repair machinery. 2007. Cell Mol Life Sci, 64, 2351-7. details
  • Sokolowska M, Kaus-Drobek M, Czapinska H, Tamulaitis G, Szczepanowski RH, Urbanke C, Siksnys V, Bochtler M. Monomeric restriction endonuclease BcnI in the apo form and in an asymmetric complex with target DNA.. 2007. J Mol Biol, 369, 722-34. details
  • Tamulaitis G, Zaremba M, Szczepanowski RH, Bochtler M, Siksnys V. Nucleotide flipping by restriction enzymes analyzed by 2-aminopurine steady-state fluorescence. 2007. Nucleic Acids Res, 35, 4792-9. details
  • Zamudio JR, Mittra B, Foldynová-Trantírková S, Zeiner GM, Lukes J, Bujnicki JM, Sturm NR, Campbell DA. The 2'-O-ribose methyltransferase for cap 1 of spliced leader RNA and U1 small nuclear RNA in Trypanosoma brucei. 2007. Mol Cell Biol, 27, 6084-92. details
  • Tkaczuk KL, Dunin-Horkawicz S, Purta E, Bujnicki JM. Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases.. 2007. BMC Bioinformatics, 8, 73. details
  • Sunita S, Purta E, Durawa M, Tkaczuk KL, Swaathi J, Bujnicki JM, Sivaraman J. Functional specialization of domains tandemly duplicated within 16S rRNA methyltransferase RsmC.. 2007. Nucleic Acids Res, 35, 4264-74. details
  • Schäfer P, Cymerman IA, Bujnicki JM, Meiss G. Human lysosomal DNase IIalpha contains two requisite PLD-signature (HxK) motifs: evidence for a pseudodimeric structure of the active enzyme species.. 2007. Protein Sci, 16, 82-91. details
  • Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. 2007. J Biosci, 32, 97-100. details
  • Sabates-Bellver J, Van der Flier LG, de Palo M, Cattaneo E, Maake C, Rehrauer H, Laczko E, Kurowski MA, Bujnicki JM, Menigatti M, Luz J, Ranalli TV, Gomes V, Pastorelli A, Faggiani R, Anti M, Jiricny J, Clevers H, Marra G. Transcriptome profile of human colorectal adenomas.. 2007. Mol Cancer Res, 5, 1263-75. details
  • Pietal MJ, Tuszynska I, Bujnicki JM. PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure.. 2007. Bioinformatics, 23, 1429-30. details
  • Pena V, Liu S, Bujnicki JM, Lührmann R, Wahl MC. Structure of a multipartite protein-protein interaction domain in splicing factor prp8 and its link to retinitis pigmentosa.. 2007. Mol Cell, 25, 615-24. details
  • Ozanick SG, Bujnicki JM, Sem DS, Anderson JT. Conserved amino acids in each subunit of the heteroligomeric tRNA m1A58 Mtase from Saccharomyces cerevisiae contribute to tRNA binding.. 2007. Nucleic Acids Res, 35, 6808-19. details
  • Orlowski J, Boniecki M, Bujnicki JM. I-Ssp6803I: the first homing endonuclease from the PD-(D/E)XK superfamily exhibits an unusual mode of DNA recognition. 2007. Bioinformatics, 23, 527-30. details
  • Miyazono K, Watanabe M, Kosinski J, Ishikawa K, Kamo M, Sawasaki T, Nagata K, Bujnicki JM, Endo Y, Tanokura M, Kobayashi I. Novel protein fold discovered in the PabI family of restriction enzymes.. 2007. Nucleic Acids Res, 35, 1908-18. details
  • Liu Y, Li Z, Lin Q, Kosinski J, Seetharaman J, Bujnicki JM, Sivaraman J, Hew CL. Structure and evolutionary origin of Ca(2+)-dependent herring type II antifreeze protein.. 2007. PLoS One, 2, e548. details
  • Kudan EV, Brevnov MG, Subach OM, Rechkoblit OA, Buĭnitskiĭ IaM, Gromova ES. [Probing of contacts between EcoRII DNA methyltransferase and DNA using substrate analogs and molecular modeling].. 2007. Mol Biol (Mosk), 41, 885-99. details
  • Kosinski J, Kubareva E, Bujnicki JM. A model of restriction endonuclease MvaI in complex with DNA: a template for interpretation of experimental data and a guide for specificity engineering.. 2007. Proteins, 68, 324-36. details
  • Koscinski L, Feder M, Bujnicki JM. Identification of a missing sequence and functionally important residues of 16S rRNA:m(1)A1408 methyltransferase KamB that causes bacterial resistance to aminoglycoside antibiotics.. 2007. Cell Cycle, 6, 1268-71. details
  • Jakubauskas A, Giedriene J, Bujnicki JM, Janulaitis A. Identification of a single HNH active site in type IIS restriction endonuclease Eco31I. 2007. J Mol Biol, 370, 157-69. details
  • Ibryashkina EM, Zakharova MV, Baskunov VB, Bogdanova ES, Nagornykh MO, Den\'mukhamedov MM, Melnik BS, Kolinski A, Gront D, Feder M, Solonin AS, Bujnicki JM. Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily.. 2007. BMC Struct Biol, 7, 48. details
  • Chovancová E, Kosinski J, Bujnicki JM, Damborský J. Phylogenetic analysis of haloalkane dehalogenases.. 2007. Proteins, 67, 305-16. details
  • Schneider G, Nieznanski K, Kilanczyk E, Bieganowski P, Kuznicki J, Filipek A. CacyBP/SIP interacts with tubulin in neuroblastoma NB2a cells and induces formation of globular tubulin assemblies.. 2007. Biochim Biophys Acta, 1773, 1628-36. details
  • Wawrzynow B, Zylicz A, Wallace M, Hupp T, Zylicz M. MDM2 chaperones the p53 tumor suppressor.. 2007. J Biol Chem, 282, 32603-12. details
  • Spiechowicz M, Zylicz A, Bieganowski P, Kuznicki J, Filipek A. Hsp70 is a new target of Sgt1--an interaction modulated by S100A6. 2007. Biochem Biophys Res Commun, 357, 1148-53. details
  • Issat T, Nowis D, Legat M, Makowski M, Klejman MP, Urbanski J, Skierski J, Koronkiewicz M, Stoklosa T, Brzezinska A, Bil J, Gietka J, Jakóbisiak M, Golab J. Potentiated antitumor effects of the combination treatment with statins and pamidronate in vitro and in vivo.. 2007. Int J Oncol, 30, 1413-25. details
  • Schneider G, Nieznanski K, Kilanczyk E, Bieganowski P, Kuznicki J, Filipek A. CacyBP/SIP interacts with tubulin in neuroblastoma NB2a cells and induces formation of globular tubulin assemblies.. 2007. Biochim Biophys Acta, 1773, 1628-36. details
  • Wawrzynow B, Zylicz A, Wallace M, Hupp T, Zylicz M. MDM2 chaperones the p53 tumor suppressor.. 2007. J Biol Chem, 282, 32603-12. details
  • Spiechowicz M, Zylicz A, Bieganowski P, Kuznicki J, Filipek A. Hsp70 is a new target of Sgt1--an interaction modulated by S100A6.. 2007. Biochem Biophys Res Commun, 357, 1148-53. details
  • Issat T, Nowis D, Legat M, Makowski M, Klejman MP, Urbanski J, Skierski J, Koronkiewicz M, Stoklosa T, Brzezinska A, Bil J, Gietka J, Jakóbisiak M, Golab J. Potentiated antitumor effects of the combination treatment with statins and pamidronate in vitro and in vivo.. 2007. Int J Oncol, 30, 1413-25. details
  • 2006
  • Kupisz-Urbańska M, Broczek K, Mossakowska M.. Ocena sprawności ruchowej polskich stulatków – wybrane zagadnienia. 2006. Gerontologia Polska, 14 (1), 36-40. details
  • Mossakowska M, Broczek K, Rajska-Neumann A, Wieczorowska-Tobis K.. Jak często i jak dużo palili polscy stulatkowie. 2006. Przegląd Lekarski, 63/10, 1105-1107. details
  • Pawlinska-Chmara R, Mossakowska M.. Ocena stanu uzębienia i użytkowych uzupełnień protetycznych polskich ludzi długowiecznych. 2006. Ann Univ M. Curie-Sklodowska, 564, 452-455. details
  • Podkówka-Sieczka R, Niemir Z, Mossakowska M, Sawiński K, Wieczorowska-Tobis K.. Analiza leukocytów krwi obwodowej osób stuletnich. 2006. Przegląd Lekarski, 63(6), 335-8. details
  • Styczyński A, Wieczorowska-Tobis K, Niemir Z, Podkówka R, Mossakowska M. Czy istnieje związek między stężeniem w surowicy interleukiny-8 i zaburzeniami funkcji poznawczych u osób stuletnich?. 2006. Przegląd Lekarski, 63/6, 332-8. details
  • Wieczorowska-Tobis K, Niemir ZI, Podkówka R, Korybalska K, Mossakowska M, Breborowicz A. Can an increased level of circulating IL-8 be a predictor of human longevity?. 2006. Med Sci Monit, 12, CR118-21. details
  • Wojda A, Zietkiewicz E, Mossakowska M, Pawłowski W, Skrzypczak K, Witt M. Correlation between the level of cytogenetic aberrations in cultured human lymphocytes and the age and gender of donors.. 2006. J Gerontol A Biol Sci Med Sci, 61, 763-72. details
  • Pietruszka B, Kollajtis-Dolowy A, Szulc K, Kaluza J, Broczek K, Pawlinska-Chmara R, Mossakowska M. Characteristics of nutrition among centenarians living in Warsaw. 2006. Pol J Food Nutr Sci , 15/56, 111-115. details
  • Kempa K, Kłapcińska B, Mossakowska M, Broczek K, Sadowska-Krępa E, Derejczyk J, Kimsa E.. Functional abilities and antioxidant defense status in female centenarians. 2006. Annales Universitatis Mariae Curie-Skłaodowska, 60, Suppl. 278, 201-5. details
  • Wojcik M, Seidle HF, Bieganowski P, Brenner C. Glutamine-dependent NAD+ synthetase. How a two-domain, three-substrate enzyme avoids waste.. 2006. J Biol Chem, 281, 33395-402. details
  • Jaworski J, Sheng M. The growing role of mTOR in neuronal development and plasticity. 2006. Mol Neurobiol, 34, 205-19. details
  • Nolan EM, Ryu JW, Jaworski J, Feazell RP, Sheng M, Lippard SJ. Zinspy sensors with enhanced dynamic range for imaging neuronal cell zinc uptake and mobilization.. 2006. J Am Chem Soc, 128, 15517-28. details
  • Szymczak S, Kalita K, Jaworski J, Mioduszewska B, Savonenko A, Markowska A, Merchenthaler I, Kaczmarek L. Increased estrogen receptor beta expression correlates with decreased spine formation in the rat hippocampus. 2006. Hippocampus, 16, 453-63. details
  • Cieplak M, Filipek S, Janovjak H, Krzyśko KA. Pulling single bacteriorhodopsin out of a membrane: Comparison of simulation and experiment.. 2006. Biochim Biophys Acta, 1758, 537-44. details
  • Jozwiak K, Zekanowski C, Filipek S. Linear patterns of Alzheimer's disease mutations along alpha-helices of presenilins as a tool for PS-1 model construction. 2006. J Neurochem, 98, 1560-72. details
  • Modzelewska A, Filipek S, Palczewski K, Park PS. Arrestin interaction with rhodopsin: conceptual models.. 2006. Cell Biochem Biophys, 46, 1-15. details
  • Tanuj Sapra K, Park PS, Filipek S, Engel A, Müller DJ, Palczewski K. Detecting molecular interactions that stabilize native bovine rhodopsin. 2006. J Mol Biol, 358, 255-69. details
  • Zekanowski C, Golan MP, Krzyśko KA, Lipczyńska-Łojkowska W, Filipek S, Kowalska A, Rossa G, Pepłońska B, Styczyńska M, Maruszak A, Religa D, Wender M, Kulczycki J, Barcikowska M, Kuźnicki J. Two novel presenilin 1 gene mutations connected with frontotemporal dementia-like clinical phenotype: genetic and bioinformatic assessment.. 2006. Exp Neurol, 200, 82-8. details
  • Zhu L, Imanishi Y, Filipek S, Alekseev A, Jastrzebska B, Sun W, Saperstein DA, Palczewski K. Autosomal recessive retinitis pigmentosa and E150K mutation in the opsin gene.. 2006. J Biol Chem, 281, 22289-98. details
  • Jaworski JS, Cembor M, Koliński M. Electrostatic model of bond dissociation energies in polyhalogen methanes. 2006. J Phys Org Chem, 19, 276-280. details
  • Groves P, Palczewska M, Kuznicki J. Calretinin, an EF-hand calcium-binding proteins, binds zinc and Cooper. 2006. Calcium Binding Proteins, 1:3, 156-159. details
  • Leśniak W, Kuźnicki J. Binding and functional characteristics of two E-box motifs within the S100A6 (calcyclin) gene promoter.. 2006. J Cell Biochem, 97, 1017-24. details
  • Spiechowicz M, Bernstein HG, Dobrowolny H, Leśniak W, Mawrin C, Bogerts B, Kuźnicki J, Filipek A. Density of Sgt1-immunopositive neurons is decreased in the cerebral cortex of Alzheimer's disease brain.. 2006. Neurochem Int, 49, 487-93. details
  • Baranowska B, Bik W, Baranowska-Bik A, Wolinska-Witort E, Szybinska A, Martynska L, Chmielowska M. Neuroendocrine control of metabolic homeostasis in Polish centenarians. 2006. J Physiol Pharmacol, 57 Suppl 6, 55-61. details
  • Bik W, Baranowska-Bik A, Wolinska-Witort E, Martynska L, Chmielowska M, Szybinska A, Broczek K, Baranowska B. The relationship between adiponectin levels and metabolic status in centenarian, early elderly, young and obese women. 2006. Neuro Endocrinol Lett, 27, 493-500. details
  • Blazejczyk M, Wojda U, Sobczak A, Spilker C, Bernstein HG, Gundelfinger ED, Kreutz MR, Kuznicki J. Ca2+-independent binding and cellular expression profiles question a significant role of calmyrin in transduction of Ca2+-signals to Alzheimer's disease-related presenilin 2 in forebrain. 2006. Biochim Biophys Acta, 1762, 66-72. details
  • Bochtler M, Szczepanowski RH, Tamulaitis G, Grazulis S, Czapinska H, Manakova E, Siksnys V. Nucleotide flips determine the specificity of the Ecl18kI restriction endonuclease. 2006. EMBO J, 25, 2219-29. details
  • Zegers I, Gigot D, van Vliet F, Tricot C, Aymerich S, Bujnicki JM, Kosinski J, Droogmans L. Crystal structure of Bacillus subtilis TrmB, the tRNA (m7G46) methyltransferase.. 2006. Nucleic Acids Res, 34, 1925-34. details
  • Zamudio JR, Mittra B, Zeiner GM, Feder M, Bujnicki JM, Sturm NR, Campbell DA. Complete cap 4 formation is not required for viability in Trypanosoma brucei.. 2006. Eukaryot Cell, 5, 905-15. details
  • Tkaczuk KL, Obarska A, Bujnicki JM. Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesis.. 2006. BMC Evol Biol, 6, 6. details
  • Skowronek KJ, Kosinski J, Bujnicki JM. Theoretical model of restriction endonuclease HpaI in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis.. 2006. Proteins, 63, 1059-68. details
  • Sikora E, Bielak-Zmijewska A, Magalska A, Piwocka K, Mosieniak G, Kalinowska M, Widlak P, Cymerman IA, Bujnicki JM. Curcumin induces caspase-3-dependent apoptotic pathway but inhibits DNA fragmentation factor 40/caspase-activated DNase endonuclease in human Jurkat cells.. 2006. Mol Cancer Ther, 5, 927-34. details
  • Samaranayake M, Bujnicki JM, Carpenter M, Bhagwat AS. Evaluation of molecular models for the affinity maturation of antibodies: roles of cytosine deamination by AID and DNA repair.. 2006. Chem Rev, 106, 700-19. details
  • Purta E, van Vliet F, Tkaczuk KL, Dunin-Horkawicz S, Mori H, Droogmans L, Bujnicki JM. The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase.. 2006. BMC Mol Biol, 7, 23. details
  • Obarska A, Blundell A, Feder M, Vejsadová S, Sisáková E, Weiserová M, Bujnicki JM, Firman K. Structural model for the multisubunit Type IC restriction-modification DNA methyltransferase M.EcoR124I in complex with DNA.. 2006. Nucleic Acids Res, 34, 1992-2005. details
  • Mikula M, Karczmarski J, Dzwonek A, Rubel T, Hennig E, Dadlez M, Bujnicki JM, Bomsztyk K, Ostrowski J. Casein kinases phosphorylate multiple residues spanning the entire hnRNP K length.. 2006. Biochim Biophys Acta, 1764, 299-306. details
  • Metz J, Wächter A, Schmidt B, Bujnicki JM, Schwappach B. The yeast Arr4p ATPase binds the chloride transporter Gef1p when copper is available in the cytosol.. 2006. J Biol Chem, 281, 410-7. details
  • Klimek-Tomczak K, Mikula M, Dzwonek A, Paziewska A, Karczmarski J, Hennig E, Bujnicki JM, Bragoszewski P, Denisenko O, Bomsztyk K, Ostrowski J. Editing of hnRNP K protein mRNA in colorectal adenocarcinoma and surrounding mucosa.. 2006. Br J Cancer, 94, 586-92. details
  • Han R, Caswell CC, Lukomska E, Keene DR, Pawlowski M, Bujnicki JM, Kim JK, Lukomski S. Binding of the low-density lipoprotein by streptococcal collagen-like protein Scl1 of Streptococcus pyogenes.. 2006. Mol Microbiol, 61, 351-67. details
  • Gros L, Renodon-Cornière A, de Saint Vincent BR, Feder M, Bujnicki JM, Jacquemin-Sablon A. Characterization of prmt7alpha and beta isozymes from Chinese hamster cells sensitive and resistant to topoisomerase II inhibitors.. 2006. Biochim Biophys Acta, 1760, 1646-56. details
  • Godlewska R, Dzwonek A, Mikuła M, Ostrowski J, Pawłowski M, Bujnicki JM, Jagusztyn-Krynicka EK. Helicobacter pylori protein oxidation influences the colonization process.. 2006. Int J Med Microbiol, 296, 321-4. details
  • Gabant G, Auxilien S, Tuszynska I, Locard M, Gajda MJ, Chaussinand G, Fernandez B, Dedieu A, Grosjean H, Golinelli-Pimpaneau B, Bujnicki JM, Armengaud J. THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain.. 2006. Nucleic Acids Res, 34, 2483-94. details
  • Dunin-Horkawicz S, Feder M, Bujnicki JM. Phylogenomic analysis of the GIY-YIG nuclease superfamily.. 2006. BMC Genomics, 7, 98. details
  • Cymerman IA, Obarska A, Skowronek KJ, Lubys A, Bujnicki JM. Identification of a new subfamily of HNH nucleases and experimental characterization of a representative member, HphI restriction endonuclease. 2006. Proteins, 65, 867-76. details
  • Chiang PK, Bujnicki JM, Su X, Lanar DE. Malaria: therapy, genes and vaccines.. 2006. Curr Mol Med, 6, 309-26. details
  • Carpenter M, Divvela P, Pingoud V, Bujnicki J, Bhagwat AS. Sequence-dependent enhancement of hydrolytic deamination of cytosines in DNA by the restriction enzyme PspGI.. 2006. Nucleic Acids Res, 34, 3762-70. details
  • Bujnicki JM. Protein-structure prediction by recombination of fragments.. 2006. Chembiochem, 7, 19-27. details
  • Bheemanaik S, Bujnicki JM, Nagaraja V, Rao DN. Functional analysis of amino acid residues at the dimerisation interface of KpnI DNA methyltransferase.. 2006. Biol Chem, 387, 515-23. details
  • Dunin-Horkawicz S, Czerwoniec A, Gajda MJ, Feder M, Grosjean H, Bujnicki JM. MODOMICS: a database of RNA modification pathways.. 2006. Nucleic Acids Res, 34, D145-9. details
  • Kudla G, Lipinski L, Caffin F, Helwak A, Zylicz M. High guanine and cytosine content increases mRNA levels in mammalian cells. 2006. PLoS Biol, 4, e180. details
  • Galazka G, Stasiolek M, Walczak A, Jurewicz A, Zylicz A, Brosnan CF, Raine CS, Selmaj KW. Brain-derived heat shock protein 70-peptide complexes induce NK cell-dependent tolerance to experimental autoimmune encephalomyelitis.. 2006. J Immunol, 176, 1588-99. details
  • Bieganowski P, Seidle HF, Wojcik M, Brenner C. Synthetic lethal and biochemical analyses of NAD and NADH kinases in Saccharomyces cerevisiae establish separation of cellular functions.. 2006. J Biol Chem, 281, 22439-45. details
  • Wojcik M, Seidle HF, Bieganowski P, Brenner C. Glutamine-dependent NAD+ synthetase. How a two-domain, three-substrate enzyme avoids waste.. 2006. J Biol Chem, 281, 33395-402. details
  • Kudla G, Lipinski L, Caffin F, Helwak A, Zylicz M. High guanine and cytosine content increases mRNA levels in mammalian cells. 2006. PLoS Biol, 4, e180. details
  • Galazka G, Stasiolek M, Walczak A, Jurewicz A, Zylicz A, Brosnan CF, Raine CS, Selmaj KW. Brain-derived heat shock protein 70-peptide complexes induce NK cell-dependent tolerance to experimental autoimmune encephalomyelitis.. 2006. J Immunol, 176, 1588-99. details
  • 2005
  • Jólkowska J, Pieczonka A, Strabel T, Boruczkowski D, Wachowiak J, Bader P, Witt M. Hematopoietic chimerism after allogeneic stem cell transplantation: a comparison of quantitative analysis by automated DNA sizing and fluorescent in situ hybridization.. 2005. BMC Blood Disord, 5, 1. details
  • Broczek KM, Pawlińska-Chmara R, Kupisz-Urbańska M, Mossakowska M. Anthropometric chest structure of Polish centenarians.. 2005. J Physiol Pharmacol, 56 Suppl 4, 9-13. details
  • Filipek S. Organization of rhodopsin molecules in native membranes of rod cells--an old theoretical model compared to new experimental data.. 2005. J Mol Model, 11, 385-91. details
  • Filipek S, Modzelewska A, Krzysko KA. Functional oligomers of rhodopsin – a G protein-coupled receptor template. 2005. Joint Meeting on Medical Chemistry, , . details
  • Sokal I, Dupps WJ, Grassi MA, Brown J Jr, Affatigato LM, Roychowdhury N, Yang L, Filipek S, Palczewski K, Stone EM, Baehr W. A novel GCAP1 missense mutation (L151F) in a large family with autosomal dominant cone-rod dystrophy (adCORD). 2005. Invest Ophthalmol Vis Sci, 46, 1124-32. details
  • Bernstein HG, Blazejczyk M, Rudka T, Gundelfinger ED, Dobrowolny H, Bogerts B, Kreutz MR, Kuznicki J, Wojda U. The Alzheimer disease-related calcium-binding protein Calmyrin is present in human forebrain with an altered distribution in Alzheimer's as compared to normal ageing brains. 2005. Neuropathol Appl Neurobiol, 31, 314-24. details
  • Bhattacharya S, Lee YT, Michowski W, Jastrzebska B, Filipek A, Kuznicki J, Chazin WJ. The modular structure of SIP facilitates its role in stabilizing multiprotein assemblies. 2005. Biochemistry, 44, 9462-71. details
  • Leśniak W, Szczepańska A, Kuźnicki J. Calcyclin (S100A6) expression is stimulated by agents evoking oxidative stress via the antioxidant response element.. 2005. Biochim Biophys Acta, 1744, 29-37. details
  • Palczewska M, Batta G, Groves P, Linse S, Kuznicki J. Characterization of calretinin I-II as an EF-hand, Ca2+, H+-sensing domain. 2005. Protein Sci, 14, 1879-87. details
  • Puzianowska-Kuznicka M, Kuznicki J. Genetic alterations in accelerated ageing syndromes. Do they play a role in natural ageing?. 2005. Int J Biochem Cell Biol, 37, 947-60. details
  • Sobczak A, Blazejczyk M, Piszczek G, Zhao G, Kuznicki J, Wojda U. Calcium-binding calmyrin forms stable covalent dimers in vitro, but in vivo is found in monomeric form.. 2005. Acta Biochim Pol, 52, 469-76. details
  • Zekanowski C, Religa D, Safranow K, Maruszak A, Dziedziejko V, Styczyńska M, Gacia M, Golan M, Pepłońska B, Chlubek D, Kuźnicki J, Barcikowska M. The -22c/t polymorphism in presenilin 1 gene is not connected with late-onset and early-onset familial Alzheimer's disease in Poland. 2005. J Neural Transm, 112, 839-45. details
  • Azim MK, Goehring W, Song HK, Ramachandran R, Bochtler M, Goettig P. Characterization of the HslU chaperone affinity for HslV protease. 2005. Protein Sci, 14, 1357-62. details
  • Dandanell G,Szczepanowski RH, Kierdaszuk B, Shugar D, Bochtler M. Escherichia coli purine nucleoside phosphorylase II, the product of the xapA gene. 2005. J Mol Biol, 348, 113-25. details
  • Filipek R, Potempa J, Bochtler M. A comparison of staphostatin B with standard mechanism serine protease inhibitors. 2005. J Biol Chem, 280, 14669-74. details
  • Firczuk M, Mucha A, Bochtler M. Crystal structures of active LytM. 2005. J Mol Biol, 354, 578-90. details
  • Grazulis S, Manakova E, Roessle M, Bochtler M, Tamulaitiene G, Huber R, Siksnys V. Structure of the metal-independent restriction enzyme BfiI reveals fusion of a specific DNA-binding domain with a nonspecific nuclease.. 2005. Proc Natl Acad Sci U S A, 102, 15797-802. details
  • Groll M, Bochtler M, Brandstetter H, Clausen T, Huber R. Molecular machines for protein degradation.. 2005. Chembiochem, 6, 222-56. details
  • Korza HJ, Bochtler M. Pseudomonas aeruginosa LD-carboxypeptidase, a serine peptidase with a Ser-His-Glu triad and a nucleophilic elbow.. 2005. J Biol Chem, 280, 40802-12. details
  • Odintsov SG, Sabała I, Bourenkov G, Rybin V, Bochtler M. Staphylococcus aureus aminopeptidase S is a founding member of a new peptidase clan. 2005. J Biol Chem, 280, 27792-9. details
  • Odintsov SG, Sabała I, Bourenkov G, Rybin V, Bochtler M. Substrate access to the active sites in aminopeptidase T, a representative of a new metallopeptidase clan.. 2005. J Mol Biol, 354, 403-12. details
  • Szczepanowski RH, Filipek R, Bochtler M. Crystal structure of a fragment of mouse ubiquitin-activating enzyme.. 2005. J Biol Chem, 280, 22006-11. details
  • Potempa J, Golonka E, Filipek R, Shaw LN. Fighting an enemy within: cytoplasmic inhibitors of bacterial cysteine proteases. 2005. Mol Microbiol, 57, 605-10. details
  • Marcyjaniak M, Odintsov SG, Sabala I, Bochtler M. Peptydoglycan amidase MepA is a LAS metallopeptidase. 2005. J Biol Chem, 279, 43982-89. details
  • Radlińska M, Piekarowicz A, Galimand M, Bujnicki JM. Cloning and preliminary characterization of a GATC-specific beta2-class DNA:m6A methyltransferase encoded by transposon Tn1549 from Enterococcus spp.. 2005. Pol J Microbiol, 54, 249-52. details
  • Radlinska M, Kondrzycka-Dada A, Piekarowicz A, Bujnicki JM. Identification of amino acids important for target recognition by the DNA:m5C methyltransferase M.NgoPII by alanine-scanning mutagenesis of residues at the protein-DNA interface.. 2005. Proteins, 58, 263-70. details
  • Raczko AM, Bujnicki JM, Pawlowski M, Godlewska R, Lewandowska M, Jagusztyn-Krynicka EK. Characterization of new DsbB-like thiol-oxidoreductases of Campylobacter jejuni and Helicobacter pylori and classification of the DsbB family based on phylogenomic, structural and functional criteria.. 2005. Microbiology, 151, 219-31. details
  • Purushothaman SK, Bujnicki JM, Grosjean H, Lapeyre B. Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA.. 2005. Mol Cell Biol, 25, 4359-70. details
  • Kosinski J, Steindorf I, Bujnicki JM, Giron-Monzon L, Friedhoff P. Analysis of the quaternary structure of the MutL C-terminal domain.. 2005. J Mol Biol, 351, 895-909. details
  • Kosinski J, Gajda MJ, Cymerman IA, Kurowski MA, Pawlowski M, Boniecki M, Obarska A, Papaj G, Sroczynska-Obuchowicz P, Tkaczuk KL, Sniezynska P, Sasin JM, Augustyn A, Bujnicki JM, Feder M. FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6.. 2005. Proteins, 61 Suppl 7, 106-13. details
  • Tkaczuk KL, Bujnicki JM, Bialkowska A, Bielecki S, Turkiewicz M, Cieslinski H, Kur J. Molecular modeling of a psychrophilic β-galactosidase. 2005. Biocatal Biotransform, 23, 201-209. details
  • Radlińska M, Piekarowicz A, Galimand M, Bujnicki JM. Cloning and preliminary characterization of a GATC-specific beta2-class DNA:m6A methyltransferase encoded by transposon Tn1549 from Enterococcus spp.. 2005. Pol J Microbiol, 54, 249-52. details
  • Radlinska M, Kondrzycka-Dada A, Piekarowicz A, Bujnicki JM. Identification of amino acids important for target recognition by the DNA:m5C methyltransferase M.NgoPII by alanine-scanning mutagenesis of residues at the protein-DNA interface.. 2005. Proteins, 58, 263-70. details
  • Raczko AM, Bujnicki JM, Pawlowski M, Godlewska R, Lewandowska M, Jagusztyn-Krynicka EK. Characterization of new DsbB-like thiol-oxidoreductases of Campylobacter jejuni and Helicobacter pylori and classification of the DsbB family based on phylogenomic, structural and functional criteria.. 2005. Microbiology, 151, 219-31. details
  • Purta E, van Vliet F, Tricot C, De Bie LG, Feder M, Skowronek K, Droogmans L, Bujnicki JM. Sequence-structure-function relationships of a tRNA (m7G46) methyltransferase studied by homology modeling and site-directed mutagenesis.. 2005. Proteins, 59, 482-8. details
  • Purushothaman SK, Bujnicki JM, Grosjean H, Lapeyre B. Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA.. 2005. Mol Cell Biol, 25, 4359-70. details
  • Pingoud V, Sudina A, Geyer H, Bujnicki JM, Lurz R, Lüder G, Morgan R, Kubareva E, Pingoud A. Specificity changes in the evolution of type II restriction endonucleases: a biochemical and bioinformatic analysis of restriction enzymes that recognize unrelated sequences. 2005. J Biol Chem, 280, 4289-98. details
  • Pingoud V, Geyer H, Geyer R, Kubareva E, Bujnicki JM, Pingoud A. Identification of base-specific contacts in protein-DNA complexes by photocrosslinking and mass spectrometry: a case study using the restriction endonuclease SsoII. 2005. Mol Biosyst, 1, 135-41. details
  • Pawlak SD, Radlinska M, Chmiel AA, Bujnicki JM, Skowronek KJ. Inference of relationships in the 'twilight zone' of homology using a combination of bioinformatics and site-directed mutagenesis: a case study of restriction endonucleases Bsp6I and PvuII. 2005. Nucleic Acids Res, 33, 661-71. details
  • Kosinski J, Steindorf I, Bujnicki JM, Giron-Monzon L, Friedhoff P. Analysis of the quaternary structure of the MutL C-terminal domain.. 2005. J Mol Biol, 351, 895-909. details
  • Kosinski J, Feder M, Bujnicki JM. The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function.. 2005. BMC Bioinformatics, 6, 172. details
  • Koliński A, Bujnicki JM. Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models.. 2005. Proteins, 61 Suppl 7, 84-90. details
  • Ishikawa K, Watanabe M, Kuroita T, Uchiyama I, Bujnicki JM, Kawakami B, Tanokura M, Kobayashi I. Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi. 2005. Nucleic Acids Res, 33, e112. details
  • Feder M, Bujnicki JM. Identification of a new family of putative PD-(D/E)XK nucleases with unusual phylogenomic distribution and a new type of the active site.. 2005. BMC Genomics, 6, 21. details
  • Cymerman IA, Meiss G, Bujnicki JM. DNase II is a member of the phospholipase D superfamily.. 2005. Bioinformatics, 21, 3959-62. details
  • Chmiel AA, Radlinska M, Pawlak SD, Krowarsch D, Bujnicki JM, Skowronek KJ. A theoretical model of restriction endonuclease NlaIV in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis and circular dichroism spectroscopy.. 2005. Protein Eng Des Sel, 18, 181-9. details
  • Chmiel AA, Bujnicki JM, Skowronek KJ. A homology model of restriction endonuclease SfiI in complex with DNA. 2005. BMC Struct Biol, 5, 2. details
  • Bujnicki J.M.. Przewidywanie struktury bialek: Boltzmann i Darwin. 2005. Kosmos, 2-3, 000-000. details
  • Armalyte E, Bujnicki JM, Giedriene J, Gasiunas G, Kosiński J, Lubys A. Mva1269I: a monomeric type IIS restriction endonuclease from Micrococcus varians with two EcoRI- and FokI-like catalytic domains.. 2005. J Biol Chem, 280, 41584-94. details
  • Klejman MP, Zhao X, van Schaik FM, Herr W, Timmers HT. Mutational analysis of BTAF1-TBP interaction: BTAF1 can rescue DNA-binding defective TBP mutants.. 2005. Nucleic Acids Res, 33, 5426-36. details
  • Ilyushik E, Pryce DW, Walerych D, Riddell T, Wakeman JA, McInerny CJ, McFarlane RJ. Psc3 cohesin of Schizosaccharomyces pombe: cell cycle analysis and identification of three distinct isoforms.. 2005. Biol Chem, 386, 613-21. details
  • Bucko-Justyna M, Lipinski L, Burgering BM, Trzeciak L. Characterization of testis-specific serine-threonine kinase 3 and its activation by phosphoinositide-dependent kinase-1-dependent signalling.. 2005. FEBS J, 272, 6310-23. details
  • 2004
  • Geremek M, Witt M. Primary ciliary dyskinesia: genes, candidate genes and chromosomal regions. 2004. J Appl Genet, 45, 347-61. details
  • Krawczyński MR, Dmeńska H, Witt M. Apparent X-linked primary ciliary dyskinesia associated with retinitis pigmentosa and a hearing loss. 2004. J Appl Genet, 45, 107-10. details
  • Krawczyński MR, Witt M. PCD and RP: X-linked inheritance of both disorders?. 2004. Pediatr Pulmonol, 38, 88-9. details
  • Lubka M, Wojda A, Witt M. Mikrojądra w komórkach człowieka - powstawanie, zawartość oraz wykorzystanie diagnostyczne i prognostyczne. 2004. Postępy Biol Kom, 31 (2), 299-311. details
  • Wieczorowska-Tobis K, Niemir ZI, Guzik P, Mossakowska M. Kidney function estimated with different formulas in centenarians. 2004. Rocz Akad Med Bialymst, 49, 219-21. details
  • Zyczkowska J, Klich-Raczka A, Mossakowska M, Gasowski J, Wieczorowska-Tobis K, Grodzicki T. Blood pressure in centenarians in Poland. 2004. J Hum Hypertens, 18, 713-6. details
  • Filipek S, Krzysko KA , Fotiadis D, Liang Y, Saperstein DA, Engel A, Palczewski K. A concept for G protein activation by G protein-coupled receptor dimers: the transducin/rhodopsin interface. 2004. Photochem Photobiol Sci, 3, 628-38. details
  • Fotiadis D, Liang Y, Filipek S, Saperstein DA, Engel A, Palczewski K. The G protein-coupled receptor rhodopsin in the native membrane. 2004. FEBS Lett, 564, 281-8. details
  • Imanishi Y, Yang L, Sokal I, Filipek S, Palczewski K, Baehr W. Diversity of guanylate cyclase-activating proteins (GCAPs) in teleost fish: characterization of three novel GCAPs (GCAP4, GCAP5, GCAP7) from zebrafish (Danio rerio) and prediction of eight GCAPs (GCAP1-8) in pufferfish (. 2004. J Mol Evol, 59, 204-17. details
  • Jastrzebska B, Maeda T, Zhu L, Fotiadis D, Filipek S, Engel A, Stenkamp RE, Palczewski K. Functional characterization of rhodopsin monomers and dimers in detergents. 2004. J Biol Chem, 279, 54663-75. details
  • Liang Y, Fotiadis D, Maeda T, Maeda A, Modzelewska A, Filipek S, Saperstein DA, Engel A, Palczewski K. Rhodopsin signaling and organization in heterozygote rhodopsin knockout mice. 2004. J Biol Chem, 279, 48189-96. details
  • Park PS, Filipek S, Wells JW, Palczewski K. Oligomerization of G protein-coupled receptors: past, present, and future.. 2004. Biochemistry, 43, 15643-56. details
  • Suda K, Filipek S, Palczewski K, Engel A, Fotiadis D. The supramolecular structure of the GPCR rhodopsin in solution and native disc membranes.. 2004. Mol Membr Biol, 21, 435-46. details
  • Zhu L, Jang GF, Jastrzebska B, Filipek S, Pearce-Kelling SE, Aguirre GD, Stenkamp RE, Acland GM, Palczewski K. A naturally occurring mutation of the opsin gene (T4R) in dogs affects glycosylation and stability of the G protein-coupled receptor.. 2004. J Biol Chem, 279, 53828-39. details
  • Billing-Marczak K, Ziemińska E, Leśniak W, Łazarewicz JW, Kuźnicki J. Calretinin gene promoter activity is differently regulated in neurons and cancer cells. Role of AP2-like cis element and zinc ions. 2004. Biochim Biophys Acta, 1678, 14-21. details
  • Lee YT, Jacob J, Michowski W, Nowotny M, Kuznicki J, Chazin WJ. Human Sgt1 binds HSP90 through the CHORD-Sgt1 domain and not the tetratricopeptide repeat domain.. 2004. J Biol Chem, 279, 16511-7. details
  • Wojda U. Gene therapy of hematopoietic cells: development of strategies and vectors. (in Polish). 2004. Postepy Biol Kom, 31(2), 245-257. details
  • Zekanowski C, Pepłońska B, Styczyńska M, Religa D, Pfeffer A, Czyzewski K, Gabryelewicz T, Szybińska A, Kijanowska-Haładyna B, Kotapka-Minc S, Łuczywek E, Barczak A, Wasiak B, Chodakowska-Zebrowska M, Przekop I, Kuźnicki J, Barcikowska M. The E318G substitution in PSEN1 gene is not connected with Alzheimer's disease in a large Polish cohort.. 2004. Neurosci Lett, 357, 167-70. details
  • Zekanowski C, Religa D, Graff C, Filipek S, Kuźnicki J. Genetic aspects of Alzheimer's disease. 2004. Acta Neurobiol Exp (Wars), 64, 19-31. details
  • Brzezińska A, Magalska A, Szybińska A, Sikora E. Proliferation and apoptosis of human CD8(+)CD28(+) and CD8(+)CD28(-) lymphocytes during aging. 2004. Exp Gerontol, 39, 539-44. details
  • Marcyjaniak M, Odintsov SG, Sabala I, Bochtler M. Peptidoglycan amidase MepA is a LAS metallopeptidase.. 2004. J Biol Chem, 279, 43982-9. details
  • Bochtler M, Odintsov SG, Marcyjaniak M, Sabala I. Similar active sites in lysostaphins and D-Ala-D-Ala metallopeptidases.. 2004. Protein Sci, 13, 854-61. details
  • Filipek R, Szczepanowski R, Sabat A, Potempa J, Bochtler M. Prostaphopain B structure: a comparison of proregion-mediated and staphostatin-mediated protease inhibition. 2004. Biochemistry, 43, 14306-15. details
  • Marcyjaniak M, Odintsov SG, Sabala I, Bochtler M. Peptidoglycan amidase MepA is a LAS metallopeptidase. 2004. J Biol Chem, 279, 43982-9. details
  • Odintsov SG, Sabala I, Marcyjaniak M, Bochtler M. Latent LytM at 1.3A resolution. 2004. J Mol Biol, 335, 775-85. details
  • Golonka E, Filipek R, Sabat A, Sinczak A, Potempa J. Genetic characterization of staphopain genes in Staphylococcus aureus. 2004. Biol Chem, 385, 1059-67. details
  • Ye X, O\'Neil PK, Foster AN, Gajda MJ, Kosinski J, Kurowski MA, Bujnicki JM, Friedman AM, Bailey-Kellogg C. Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure.. 2004. Protein Sci, 13, 3298-313. details
  • Schäfer P, Scholz SR, Gimadutdinow O, Cymerman IA, Bujnicki JM, Ruiz-Carrillo A, Pingoud A, Meiss G. Structural and functional characterization of mitochondrial EndoG, a sugar non-specific nuclease which plays an important role during apoptosis.. 2004. J Mol Biol, 338, 217-28. details
  • Sasin JM, Bujnicki JM. COLORADO3D, a web server for the visual analysis of protein structures.. 2004. Nucleic Acids Res, 32, W586-9. details
  • Saravanan M, Bujnicki JM, Cymerman IA, Rao DN, Nagaraja V. Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily.. 2004. Nucleic Acids Res, 32, 6129-35. details
  • Roovers M, Wouters J, Bujnicki JM, Tricot C, Stalon V, Grosjean H, Droogmans L. A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase. 2004. Nucleic Acids Res, 32, 465-76. details
  • Potluri S, Khan AA, Kuzminykh A, Bujnicki JM, Friedman AM, Bailey-Kellogg C. Geometric analysis of cross-linkability for protein fold discrimination.. 2004. Pac Symp Biocomput, , 447-58. details
  • Paziewska A, Wyrwicz LS, Bujnicki JM, Bomsztyk K, Ostrowski J. Cooperative binding of the hnRNP K three KH domains to mRNA targets.. 2004. FEBS Lett, 577, 134-40. details
  • Nes WD, Jayasimha P, Zhou W, Kanagasabai R, Jin C, Jaradat TT, Shaw RW, Bujnicki JM. Sterol methyltransferase: functional analysis of highly conserved residues by site-directed mutagenesis.. 2004. Biochemistry, 43, 569-76. details
  • Maravić G, Bujnicki JM, Flögel M. Mutational analysis of basic residues in the N-terminus of the rRNA:m6A methyltransferase ErmC'. 2004. Folia Microbiol (Praha), 49, 3-7. details
  • Koudan EV, Bujnicki JM, Gromova ES. Homology modeling of the CG-specific DNA methyltransferase SssI and its complexes with DNA and AdoHcy.. 2004. J Biomol Struct Dyn, 22, 339-45. details
  • Bujnicki JM, Oudjama Y, Roovers M, Owczarek S, Caillet J, Droogmans L. Identification of a bifunctional enzyme MnmC involved in the biosynthesis of a hypermodified uridine in the wobble position of tRNA.. 2004. RNA, 10, 1236-42. details
  • Bujnicki JM, Feder M, Ayres CL, Redman KL. Sequence-structure-function studies of tRNA:m5C methyltransferase Trm4p and its relationship to DNA:m5C and RNA:m5U methyltransferases.. 2004. Nucleic Acids Res, 32, 2453-63. details
  • Armengaud J, Urbonavicius J, Fernandez B, Chaussinand G, Bujnicki JM, Grosjean H. N2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine-dependent methyltransferase, conserved in Archaea and Eukaryota.. 2004. J Biol Chem, 279, 37142-52. details
  • Koudan EV, Bujnicki JM, Gromova ES. Homology modeling of the CG-specific DNA methyltransferase SssI and its complexes with DNA and AdoHcy.. 2004. J Biomol Struct Dyn, 22, 339-45. details
  • Bujnicki JM, Oudjama Y, Roovers M, Owczarek S, Caillet J, Droogmans L. Identification of a bifunctional enzyme MnmC involved in the biosynthesis of a hypermodified uridine in the wobble position of tRNA.. 2004. RNA, 10, 1236-42. details
  • Bujnicki JM, Feder M, Ayres CL, Redman KL. Sequence-structure-function studies of tRNA:m5C methyltransferase Trm4p and its relationship to DNA:m5C and RNA:m5U methyltransferases.. 2004. Nucleic Acids Res, 32, 2453-63. details
  • Armengaud J, Urbonavicius J, Fernandez B, Chaussinand G, Bujnicki JM, Grosjean H. N2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine-dependent methyltransferase, conserved in Archaea and Eukaryota.. 2004. J Biol Chem, 279, 37142-52. details
  • Mycko MP, Cwiklinska H, Szymanski J, Szymanska B, Kudla G, Kilianek L, Odyniec A, Brosnan CF, Selmaj KW. Inducible heat shock protein 70 promotes myelin autoantigen presentation by the HLA class II.. 2004. J Immunol, 172, 202-13. details
  • Kudla G, Helwak A, Lipinski L. Gene conversion and GC-content evolution in mammalian Hsp70.. 2004. Mol Biol Evol, 21, 1438-44. details
  • Walerych D, Kudla G, Gutkowska M, Wawrzynow B, Muller L, King FW, Helwak A, Boros J, Zylicz A, Zylicz M. Hsp90 chaperones wild-type p53 tumor suppressor protein.. 2004. J Biol Chem, 279, 48836-45. details
  • Jassem J, Jassem E, Jakóbkiewicz-Banecka J, Rzyman W, Badzio A, Dziadziuszko R, Kobierska-Gulida G, Szymanowska A, Skrzypski M, Zylicz M. P53 and K-ras mutations are frequent events in microscopically negative surgical margins from patients with nonsmall cell lung carcinoma.. 2004. Cancer, 100, 1951-60. details
  • Dworakowska D, Jassem E, Jassem J, Peters B, Dziadziuszko R, Zylicz M, Jakóbkiewicz-Banecka J, Kobierska-Gulida G, Szymanowska A, Skokowski J, Roessner A, Schneider-Stock R. MDM2 gene amplification: a new independent factor of adverse prognosis in non-small cell lung cancer (NSCLC).. 2004. Lung Cancer, 43, 285-95. details
  • Mycko MP, Cwiklinska H, Szymanski J, Szymanska B, Kudla G, Kilianek L, Odyniec A, Brosnan CF, Selmaj KW. Inducible heat shock protein 70 promotes myelin autoantigen presentation by the HLA class II.. 2004. J Immunol, 172, 202-13. details
  • Kudla G, Helwak A, Lipinski L. Gene conversion and GC-content evolution in mammalian Hsp70.. 2004. Mol Biol Evol, 21, 1438-44. details
  • Walerych D, Kudla G, Gutkowska M, Wawrzynow B, Muller L, King FW, Helwak A, Boros J, Zylicz A, Zylicz M. Hsp90 chaperones wild-type p53 tumor suppressor protein.. 2004. J Biol Chem, 279, 48836-45. details
  • Müller L, Schaupp A, Walerych D, Wegele H, Buchner J. Hsp90 regulates the activity of wild type p53 under physiological and elevated temperatures.. 2004. J Biol Chem, 279, 48846-54. details
  • Jassem J, Jassem E, Jakóbkiewicz-Banecka J, Rzyman W, Badzio A, Dziadziuszko R, Kobierska-Gulida G, Szymanowska A, Skrzypski M, Zylicz M. P53 and K-ras mutations are frequent events in microscopically negative surgical margins from patients with nonsmall cell lung carcinoma.. 2004. Cancer, 100, 1951-60. details
  • Dworakowska D, Jassem E, Jassem J, Peters B, Dziadziuszko R, Zylicz M, Jakóbkiewicz-Banecka J, Kobierska-Gulida G, Szymanowska A, Skokowski J, Roessner A, Schneider-Stock R. MDM2 gene amplification: a new independent factor of adverse prognosis in non-small cell lung cancer (NSCLC).. 2004. Lung Cancer, 43, 285-95. details
  • Lee YT, Jacob J, Michowski W, Nowotny M, Kuznicki J, Chazin WJ. Human Sgt1 binds HSP90 through the CHORD-Sgt1 domain and not the tetratricopeptide repeat domain.. 2004. J Biol Chem, 279, 16511-7. details
  • 2003
  • Pruszynski J, Gross R, Mossakowska M, Barcikowska M, Czyzewski K, Derejczyk J, Galus K, Grodzicki T, Jedrkiewicz H, Klich-Raczka A, Kupsc W, Luczywek E, Pfeffer A, Puzianowska-Kuznicka M, Sosnowski M, Styczynska M, Wasiak B, Wieczorowska-Tobis K, Zyczkows. Functioning of Polish centenarians. 2003. Gerontologia, 2, 80-83 . details
  • Wojda A, Witt M. Manifestations of ageing at the cytogenetic level.. 2003. J Appl Genet, 44, 383-99. details
  • Wojda A, Wolnik-Brzozowska D, Lubka M, Mossakowska M, Witt M. The 102-year old woman with translocation (7;12) and infertility in anamnesis. 2003. J Appl Genet, 44, 425-7. details
  • Zyczkowska J, Klich-Raczka A, Wizner B, Mossakowska M, Wieczorowska-Tobis K, Grodzicki T. Hypertension and cognitive and functional performance in centenarians. 2003. New Medicine, 6, 82-86 . details
  • Majka L, Goździk J, Witt M. Cystic fibrosis--a probable cause of Frédéric Chopin's suffering and death.. 2003. J Appl Genet, 44, 77-84. details
  • Filipek S, Teller DC, Palczewski K, Stenkamp R. The crystallographic model of rhodopsin and its use in studies of other G protein-coupled receptors.. 2003. Annu Rev Biophys Biomol Struct, 32, 375-97. details
  • Fotiadis D, Liang Y, Filipek S, Saperstein DA, Engel A, Palczewski K. Atomic-force microscopy: Rhodopsin dimers in native disc membranes. 2003. Nature, 421, 127-8. details
  • Fritze O, Filipek S, Kuksa V, Palczewski K, Hofmann KP, Ernst OP. Role of the conserved NPxxY(x)5,6F motif in the rhodopsin ground state and during activation.. 2003. Proc Natl Acad Sci U S A, 100, 2290-5. details
  • Liang Y, Fotiadis D, Filipek S, Saperstein DA, Palczewski K, Engel A. Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes.. 2003. J Biol Chem, 278, 21655-62. details
  • Liang Y, Fotiadis D, Filipek S, Saperstein DA, Palczewski K, Engel A. Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes. 2003. J Biol Chem, 278, 21655-62. details
  • Maeda T, Van Hooser JP, Driessen CA, Filipek S, Janssen JJ, Palczewski K. Evaluation of the role of the retinal G protein-coupled receptor (RGR) in the vertebrate retina in vivo.. 2003. J Neurochem, 85, 944-56. details
  • Mirzadegan T, Benkö G, Filipek S, Palczewski K. Sequence analyses of G-protein-coupled receptors: similarities to rhodopsin.. 2003. Biochemistry, 42, 2759-67. details
  • Noorwez SM, Kuksa V, Imanishi Y, Zhu L, Filipek S, Palczewski K, Kaushal S. Pharmacological chaperone-mediated in vivo folding and stabilization of the P23H-opsin mutant associated with autosomal dominant retinitis pigmentosa.. 2003. J Biol Chem, 278, 14442-50. details
  • Schadel SA, Heck M, Maretzki D, Filipek S, Teller DC, Palczewski K, Hofmann KP. Ligand channeling within a G-protein-coupled receptor. The entry and exit of retinals in native opsin.. 2003. J Biol Chem, 278, 24896-903. details
  • Nowotny M, Spiechowicz M, Jastrzebska B, Filipek A, Kitagawa K, Kuznicki J. Calcium-regulated interaction of Sgt1 with S100A6 (calcyclin) and other S100 proteins. 2003. J Biol Chem, 278, 26923-8. details
  • Palczewska M, Groves P, Batta G, Heise B, Kuźnicki J. Calretinin and calbindin D28k have different domain organizations. 2003. Protein Sci, 12, 180-4. details
  • Pepłońska B, Zekanowski C, Religa D, Czyzewski K, Styczyńska M, Pfeffer A, Gabryelewicz T, Gołebiowski M, Luczywek E, Wasiak B, Barczak A, Chodakowska M, Barcikowska M, Kuźnicki J. Strong association between Saitohin gene polymorphism and tau haplotype in the Polish population. 2003. Neurosci Lett, 348, 163-6. details
  • Zekanowski C, Styczyńska M, Pepłońska B, Gabryelewicz T, Religa D, Ilkowski J, Kijanowska-Haładyna B, Kotapka-Minc S, Mikkelsen S, Pfeffer A, Barczak A, Łuczywek E, Wasiak B, Chodakowska-Zebrowska M, Gustaw K, Łaczkowski J, Sobów T, Kuźnicki J, Barcikowsk. Mutations in presenilin 1, presenilin 2 and amyloid precursor protein genes in patients with early-onset Alzheimer's disease in Poland. 2003. Exp Neurol, 184, 991-6. details
  • Zekanowski C, Pepłońska B, Styczyńska M, Gustaw K, Kuźnicki J, Barcikowska M. Mutation screening of the MAPT and STH genes in Polish patients with clinically diagnosed frontotemporal dementia. 2003. Dement Geriatr Cogn Disord, 16, 126-31. details
  • Zekanowski C, Przyluska-Fiszer A, Barcikowska M. Alzheimer's disease: between diagnostic, economy and ethic (in Polish). 2003. Choroby otępienne. Teoria i praktyka, 1, . details
  • Tighe O, Dunican D, O'Neill C, Bertorelle G, Beattie D, Graham C, Zschocke J, Cali F, Romano V, Hrabincova E, Kozak L, Nechyporenko M, Livshits L, Guldberg P, Jurkowska M, Zekanowski C, Perez B, Desviat LR, Ugarte M, Kucinskas V, Knappskog P, Treacy E, N. Genetic diversity within the R408W phenylketonuria mutation lineages in Europe. 2003. Hum Mutat, 21, 387-93. details
  • Zekanowski C . The sun, the genome, the internet… eugenics?. 2003. Gemellological Rev, May, 5-7. details
  • Zekanowski C. Molecular diagnostics of Alzheimer's disease (in Polish). 2003. Medycyna ogólna, 9, 42-56. details
  • Dubin G, Krajewski M, Popowicz G, Stec-Niemczyk J, Bochtler M, Potempa J, Dubin A, Holak TA. A novel class of cysteine protease inhibitors: solution structure of staphostatin A from Staphylococcus aureus.. 2003. Biochemistry, 42, 13449-56. details
  • Filipek R, Rzychon M, Oleksy A, Gruca M, Dubin A, Potempa J, Bochtler M. The Staphostatin-staphopain complex: a forward binding inhibitor in complex with its target cysteine protease.. 2003. J Biol Chem, 278, 40959-66. details
  • Rzychon M, Filipek R, Sabat A, Kosowska K, Dubin A, Potempa J, Bochtler M. Staphostatins resemble lipocalins, not cystatins in fold. 2003. Protein Sci, 12, 2252-6. details
  • Scholz SR, Korn C, Bujnicki JM, Gimadutdinow O, Pingoud A, Meiss G. Experimental evidence for a beta beta alpha-Me-finger nuclease motif to represent the active site of the caspase-activated DNase.. 2003. Biochemistry, 42, 9288-94. details
  • Sasin JM, Kurowski MA, Bujnicki JM. STRUCLA: a WWW meta-server for protein structure comparison and evolutionary classification.. 2003. Bioinformatics, 19 Suppl 1, i252-4. details
  • Pingoud V, Conzelmann C, Kinzebach S, Sudina A, Metelev V, Kubareva E, Bujnicki JM, Lurz R, Lüder G, Xu SY, Pingoud A. PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes. 2003. J Mol Biol, 329, 913-29. details
  • Mouaikel J, Bujnicki JM, Tazi J, Bordonné R. Sequence-structure-function relationships of Tgs1, the yeast snRNA/snoRNA cap hypermethylase. 2003. Nucleic Acids Res, 31, 4899-909. details
  • Maravić G, Feder M, Pongor S, Flögel M, Bujnicki JM. Mutational analysis defines the roles of conserved amino acid residues in the predicted catalytic pocket of the rRNA:m6A methyltransferase ErmC'. 2003. J Mol Biol, 332, 99-109. details
  • Maravić G, Bujnicki JM, Feder M, Pongor S, Flögel M. Alanine-scanning mutagenesis of the predicted rRNA-binding domain of ErmC' redefines the substrate-binding site and suggests a model for protein-RNA interactions. 2003. Nucleic Acids Res, 31, 4941-9. details
  • Kurowski MA, Sasin JM, Feder M, Debski J, Bujnicki JM. Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of S-adenosylmethionine to three crystal structures.. 2003. BMC Bioinformatics, 4, 9. details
  • Kurowski MA, Bujnicki JM. GeneSilico protein structure prediction meta-server.. 2003. Nucleic Acids Res, 31, 3305-7. details
  • Kurowski MA, Bhagwat AS, Papaj G, Bujnicki JM. Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB.. 2003. BMC Genomics, 4, 48. details
  • Kosinski J, Cymerman IA, Feder M, Kurowski MA, Sasin JM, Bujnicki JM. A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation. 2003. Proteins, 53 Suppl 6, 369-79. details
  • Gordon RK, Ginalski K, Rudnicki WR, Rychlewski L, Pankaskie MC, Bujnicki JM, Chiang PK. Anti-HIV-1 activity of 3-deaza-adenosine analogs. Inhibition of S-adenosylhomocysteine hydrolase and nucleotide congeners.. 2003. Eur J Biochem, 270, 3507-17. details
  • Feder M, Pas J, Wyrwicz LS, Bujnicki JM. Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2'-O-methyltransferases. 2003. Gene, 302, 129-38. details
  • Droogmans L, Roovers M, Bujnicki JM, Tricot C, Hartsch T, Stalon V, Grosjean H. Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures.. 2003. Nucleic Acids Res, 31, 2148-56. details
  • De Bie LG, Roovers M, Oudjama Y, Wattiez R, Tricot C, Stalon V, Droogmans L, Bujnicki JM. The yggH gene of Escherichia coli encodes a tRNA (m7G46) methyltransferase.. 2003. J Bacteriol, 185, 3238-43. details
  • Bujnicki JM, Prigge ST, Caridha D, Chiang PK. Structure, evolution, and inhibitor interaction of S-adenosyl-L-homocysteine hydrolase from Plasmodium falciparum.. 2003. Proteins, 52, 624-32. details
  • Bujnicki JM, Albert MA, Nelson DJ, Thurlow DL. Fold recognition, homology modeling, docking simulations, kinetics analysis and mutagenesis of ATP/CTP:tRNA nucleotidyltransferase from Methanococcus jannaschii.. 2003. Proteins, 52, 349-59. details
  • Bujnicki JM. Crystallographic and bioinformatic studies on restriction endonucleases: inference of evolutionary relationships in the "midnight zone" of homology. 2003. Curr Protein Pept Sci, 4, 327-37. details
  • Coker JA, Sheridan PP, Loveland-Curtze J, Gutshall KR, Auman AJ, Brenchley JE. Biochemical characterization of a beta-galactosidase with a low temperature optimum obtained from an Antarctic arthrobacter isolate.. 2003. J Bacteriol, 185, 5473-82. details
  • Coker JA, Sheridan PP, Loveland-Curtze J, Gutshall KR, Auman AJ, Brenchley JE. Biochemical characterization of a beta-galactosidase with a low temperature optimum obtained from an Antarctic arthrobacter isolate.. 2003. J Bacteriol, 185, 5473-82. details
  • Nowotny M, Spiechowicz M, Jastrzebska B, Filipek A, Kitagawa K, Kuznicki J. Calcium-regulated interaction of Sgt1 with S100A6 (calcyclin) and other S100 proteins. 2003. J Biol Chem., 278(29), 26923-8. details
  • 2002
  • Wieczorowska-Tobis K, Mossakowska M, Niemir Z, Breborowicz A, Oreopoulos DG. Discrepancies in creatinine clearance in centenarians when calculated by two different mathematical formulas.. 2002. Nephrol Dial Transplant, 17, 2274-5. details
  • Wieczorowska-Tobis K, Niemir Z, Mossakowska M, Klich-Raczka A, Zyczkowska J. Anemia in centenarians. 2002. J Am Geriatr Soc, 50, 1311-3. details
  • Billing-Marczak K, Buzanska L, Winsky L, Nowotny M, Rudka T, Isaacs K, Belin MF, Kuznicki J. AP2-like cis element is required for calretinin gene promoter activity in cells of neuronal phenotype differentiated from multipotent human cell line DEV.. 2002. Biochim Biophys Acta, 1577, 412-20. details
  • Kuksa V, Bartl F, Maeda T, Jang GF, Ritter E, Heck M, Van Hooser JP, Liang Y, Filipek S, Gelb MH, Hofmann KP, Palczewski K. Biochemical and physiological properties of rhodopsin regenerated with 11-cis-6-ring- and 7-ring-retinals.. 2002. J Biol Chem, 277, 42315-24. details
  • Billing-Marczak K, Buzanska L, Winsky L, Nowotny M, Rudka T, Isaacs K, Belin MF, Kuznicki J. AP2-like cis element is required for calretinin gene promoter activity in cells of neuronal phenotype differentiated from multipotent human cell line DEV. 2002. Biochim Biophys Acta, 1577, 412-20. details
  • Filipek A, Jastrzebska B, Nowotny M, Kuznicki J. CacyBP/SIP, a calcyclin and Siah-1-interacting protein, binds EF-hand proteins of the S100 family. 2002. J Biol Chem, 277, 28848-52. details
  • Filipek A, Jastrzebska B, Nowotny M, Kwiatkowska K, Hetman M, Surmacz L, Wyroba E,Kuznicki J. Ca2+-dependent translocation of the calcyclin-binding protein in neurons and neuroblastoma NB-2a cells. 2002. J Biol Chem, 277, 21103-9. details
  • Cabalska B, Nowacka M, Nowaczewska I, Zekanowski C, Zorska K. Atypical PKU - treatment effectiveness. 2002. Medycyna Wieku Rozwojowego VI, 3, 191-200. details
  • Zekanowski C, Gizewska M, Nowacka M, Cabalska B. Novel PKU treatment methods. 2002. Medycyna Wieku Rozwojowego, (3/2002), 169-191. details
  • Zekanowski C. Genetic aspects of Alzheimer’s disease. 2002. Medycyna Ogólna, 8 (XXXVII), 3. details
  • Ramachandran R, Hartmann C, Song HK, Huber R, Bochtler M. Functional interactions of HslV (ClpQ) with the ATPase HslU (ClpY). 2002. Proc Natl Acad Sci U S A, 99, 7396-401. details
  • Zhang P, Nicholson DE, Bujnicki JM, Su X, Brendle JJ, Ferdig M, Kyle DE, Milhous WK, Chiang PK. Angiogenesis inhibitors specific for methionine aminopeptidase 2 as drugs for malaria and leishmaniasis. 2002. J Biomed Sci, 9, 34-40. details
  • Xu Y, Keene DR, Bujnicki JM, Höök M, Lukomski S. Streptococcal Scl1 and Scl2 proteins form collagen-like triple helices.. 2002. J Biol Chem, 277, 27312-8. details
  • Pintard L, Lecointe F, Bujnicki JM, Bonnerot C, Grosjean H, Lapeyre B. Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop. 2002. EMBO J, 21, 1811-20. details
  • Pintard L, Bujnicki JM, Lapeyre B, Bonnerot C. MRM2 encodes a novel yeast mitochondrial 21S rRNA methyltransferase. 2002. EMBO J, 21, 1139-47. details
  • Pingoud V, Kubareva E, Stengel G, Friedhoff P, Bujnicki JM, Urbanke C, Sudina A, Pingoud A. Evolutionary relationship between different subgroups of restriction endonucleases.. 2002. J Biol Chem, 277, 14306-14. details
  • Godlewska R, Bujnicki JM, Ostrowski J, Jagusztyn-Krynicka EK. The hppA gene of Helicobacter pylori encodes the class C acid phosphatase precursor. 2002. FEBS Lett, 525, 39-42. details
  • Bujnicki J, Rychlewski L, Fischer D. Fold-recognition detects an error in the Protein Data Bank. 2002. Bioinformatics, 18, 1391-5. details
  • Bujnicki JM, Rychlewski L. In silico identification, structure prediction and phylogenetic analysis of the 2'-O-ribose (cap 1) methyltransferase domain in the large structural protein of ssRNA negative-strand viruses. 2002. Protein Eng, 15, 101-8. details
  • Bujnicki JM, Rychlewski L. RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited--bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure. 2002. BMC Bioinformatics, 3, 10. details
  • Bujnicki JM, Rychlewski L. Fold-recognition analysis predicts that the Tag protein family shares a common domain with the helix-hairpin-helix DNA glycosylases. 2002. DNA Repair (Amst), 1, 391-5. details
  • Bujnicki JM, Leach RA, Debski J, Rychlewski L. Bioinformatic analyses of the tRNA: (guanine 26, N2,N2)-dimethyltransferase (Trm1) family. 2002. J Mol Microbiol Biotechnol, 4, 405-15. details
  • Bujnicki JM, Feder M, Rychlewski L, Fischer D. Errors in the D. radiodurans large ribosomal subunit structure detected by protein fold-recognition and structure validation tools. 2002. FEBS Lett, 525, 174-5. details
  • Bujnicki JM, Feder M, Radlinska M, Blumenthal RM. Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA:m(6)A methyltransferase. 2002. J Mol Evol, 55, 431-44. details
  • Bujnicki JM, Blumenthal RM, Rychlewski L. Sequence analysis and structure prediction of 23S rRNA:m1G methyltransferases reveals a conserved core augmented with a putative Zn-binding domain in the N-terminus and family-specific elaborations in the C-terminus. 2002. J Mol Microbiol Biotechnol, 4, 93-9. details
  • Bujnicki JM. Sequence permutations in the molecular evolution of DNA methyltransferases. 2002. BMC Evol Biol, 2, 3. details
  • Filipek A, Jastrzebska B, Nowotny M, Kwiatkowska K, Hetman M, Surmacz L, Wyroba E, Kuznicki J. Ca2+-dependent translocation of the calcyclin-binding protein in neurons and neuroblastoma NB-2a cells.. 2002. J Biol Chem, 277, 21103-9. details
  • Filipek A, Jastrzebska B, Nowotny M, Kuznicki J. CacyBP/SIP, a calcyclin and Siah-1-interacting protein, binds EF-hand proteins of the S100 family. 2002. J Biol Chem, 277, 28848-52. details
  • Billing-Marczak K, Buzanska L, Winsky L, Nowotny M, Rudka T, Isaacs K, Belin MF, Kuznicki J. AP2-like cis element is required for calretinin gene promoter activity in cells of neuronal phenotype differentiated from multipotent human cell line DEV.. 2002. Biochim Biophys Acta, 1577, 412-20. details
  • 2001
  • Wieczorowska-Tobis K, Mossakowska M, Niemir Z, Breborowicz A, Oreopoulos DG. Plasma creatine and sodium abnormalities in Polish centenarians. 2001. Ann Acad Med Gedan, 31, 53-58. details
  • Palczewska M, Groves P, Ambrus A, Kaleta A, Kövér KE, Batta G, Kuźnicki J. Structural and biochemical characterization of neuronal calretinin domain I-II (residues 1-100). Comparison to homologous calbindin D28k domain I-II (residues 1-93). 2001. Eur J Biochem, 268, 6229-37. details
  • Radlinska M, Bujnicki JM. Site-directed mutagenesis defines the catalytic aspartate in the active site of the atypical DNA: m4C methyltransferase M.NgoMXV. 2001. Acta Microbiol Pol, 50, 97-105. details
  • Radlinska M, Bujnicki JM. Cloning of enterohemorrhagic Escherichia coli phage VT-2 dam methyltransferase. 2001. Acta Microbiol Pol, 50, 161-7. details
  • Lundström J, Rychlewski L, Bujnicki J, Elofsson A. Pcons: a neural-network-based consensus predictor that improves fold recognition. 2001. Protein Sci, 10, 2354-62. details
  • Bujnicki JM, Rychlewski L. The herpesvirus alkaline exonuclease belongs to the restriction endonuclease PD-(D/E)XK superfamily: insight from molecular modeling and phylogenetic analysis.. 2001. Virus Genes, 22, 219-30. details
  • Bujnicki JM, Rychlewski L. Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles.. 2001. J Mol Microbiol Biotechnol, 3, 69-72. details
  • Bujnicki JM, Rychlewski L. Reassignment of specificities of two cap methyltransferase domains in the reovirus lambda 2 protein. 2001. Genome Biol, 2, RESEARCH0038. details
  • Bujnicki JM, Rychlewski L. Unusual evolutionary history of the tRNA splicing endonuclease EndA: relationship to the LAGLIDADG and PD-(D/E)XK deoxyribonucleases.. 2001. Protein Sci, 10, 656-60. details
  • Bujnicki JM, Rychlewski L. Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs. 2001. Gene, 267, 183-91. details
  • Bujnicki JM, Rychlewski L. Sequence analysis and structure prediction of aminoglycoside-resistance 16S rRNA:m7G methyltransferases. 2001. Acta Microbiol Pol, 50, 7-17. details
  • Bujnicki JM, Rotkiewicz P, Kolinski A, Rychlewski L. Three-dimensional modeling of the I-TevI homing endonuclease catalytic domain, a GIY-YIG superfamily member, using NMR restraints and Monte Carlo dynamics.. 2001. Protein Eng, 14, 717-21. details
  • Bujnicki JM, Radlinska M, Zaleski P, Piekarowicz A. Cloning of the Haemophilus influenzae Dam methyltransferase and analysis of its relationship to the Dam methyltransferase encoded by the HP1 phage. 2001. Acta Biochim Pol, 48, 969-83. details
  • Bujnicki JM, Radlinska M, Rychlewski L. Polyphyletic evolution of type II restriction enzymes revisited: two independent sources of second-hand folds revealed. 2001. Trends Biochem Sci, 26, 9-11. details
  • Bujnicki JM, Radlinska M. Cloning and characterization of M.LmoA118I, a novel DNA:m4C methyltransferase from the Listeria monocytogenes phage A118, a close homolog of M.NgoMXV. 2001. Acta Microbiol Pol, 50, 155-60. details
  • Bujnicki JM, Feder M, Radlinska M, Rychlewski L. mRNA:guanine-N7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships. 2001. BMC Bioinformatics, 2, 2. details
  • Bujnicki JM, Elofsson A, Fischer D, Rychlewski L. LiveBench-2: large-scale automated evaluation of protein structure prediction servers.. 2001. Proteins, Suppl 5, 184-91. details
  • Bujnicki JM, Elofsson A, Fischer D, Rychlewski L. LiveBench-1: continuous benchmarking of protein structure prediction servers. 2001. Protein Sci, 10, 352-61. details
  • Bujnicki JM, Elofsson A, Fischer D, Rychlewski L. Structure prediction meta server. 2001. Bioinformatics, 17, 750-1. details
  • Bujnicki JM. A model of structure and action of Sau3AI restriction endonuclease that comprises two MutH-like endonuclease domains within a single polypeptide.. 2001. Acta Microbiol Pol, 50, 219-31. details
  • Bujnicki JM. Understanding the evolution of restriction-modification systems: clues from sequence and structure comparisons.. 2001. Acta Biochim Pol, 48, 935-67. details
  • Bujnicki JM. In silico analysis of the tRNA:m1A58 methyltransferase family: homology-based fold prediction and identification of new members from Eubacteria and Archaea. 2001. FEBS Lett, 507, 123-7. details
  • Kaczanowski R, Trzeciak L, Kucharczyk K. Multitemperature single-strand conformation polymorphism.. 2001. Electrophoresis, 22, 3539-45. details
  • Zylicz M, Wawrzynow A. Insights into the function of Hsp70 chaperones.. 2001. IUBMB Life, 51, 283-7. details
  • Zylicz M, King FW, Wawrzynow A. Hsp70 interactions with the p53 tumour suppressor protein. 2001. EMBO J, 20, 4634-8. details
  • King FW, Wawrzynow A, Höhfeld J, Zylicz M. Co-chaperones Bag-1, Hop and Hsp40 regulate Hsc70 and Hsp90 interactions with wild-type or mutant p53.. 2001. EMBO J, 20, 6297-305. details
  • Jassem E, Nikliński J, Rosell R, Niklińska W, Jakóbkiewicz J, Monzo M, Chyczewski L, Kobierska G, Skokowski J, Zylicz M, Jassem J. Types and localisation of p53 gene mutations: a report on 332 non-small cell lung cancer patients.. 2001. Lung Cancer, 34 Suppl 2, S47-51. details
  • Genevaux P, Wawrzynow A, Zylicz M, Georgopoulos C, Kelley WL. DjlA is a third DnaK co-chaperone of Escherichia coli, and DjlA-mediated induction of colanic acid capsule requires DjlA-DnaK interaction.. 2001. J Biol Chem, 276, 7906-12. details
  • Banecki B, Wawrzynow A, Puzewicz J, Georgopoulos C, Zylicz M. Structure-function analysis of the zinc-binding region of the Clpx molecular chaperone.. 2001. J Biol Chem, 276, 18843-8. details
  • Kaczanowski R, Trzeciak L, Kucharczyk K. Multitemperature single-strand conformation polymorphism.. 2001. Electrophoresis, 22, 3539-45. details
  • Zylicz M, Wawrzynow A. Insights into the function of Hsp70 chaperones.. 2001. IUBMB Life, 51, 283-7. details
  • Zylicz M, King FW, Wawrzynow A. Hsp70 interactions with the p53 tumour suppressor protein. 2001. EMBO J, 20, 4634-8. details
  • King FW, Wawrzynow A, Höhfeld J, Zylicz M. Co-chaperones Bag-1, Hop and Hsp40 regulate Hsc70 and Hsp90 interactions with wild-type or mutant p53.. 2001. EMBO J, 20, 6297-305. details
  • Jassem E, Nikliński J, Rosell R, Niklińska W, Jakóbkiewicz J, Monzo M, Chyczewski L, Kobierska G, Skokowski J, Zylicz M, Jassem J. Types and localisation of p53 gene mutations: a report on 332 non-small cell lung cancer patients. 2001. Lung Cancer, 34 Suppl 2, S47-51. details
  • Genevaux P, Wawrzynow A, Zylicz M, Georgopoulos C, Kelley WL. DjlA is a third DnaK co-chaperone of Escherichia coli, and DjlA-mediated induction of colanic acid capsule requires DjlA-DnaK interaction.. 2001. J Biol Chem, 276, 7906-12. details
  • Banecki B, Wawrzynow A, Puzewicz J, Georgopoulos C, Zylicz M. Structure-function analysis of the zinc-binding region of the Clpx molecular chaperone.. 2001. J Biol Chem, 276, 18843-8. details
  • 2000
  • Zekanowski C. Cloning - the crossroads of biology and culture. 2000. Gemellological Review, 3, 5-8. details
  • Mossakowska M, Puzianowska-Kuznicka M, Barcikowska M, Chiron-Jouan S, Czyzewski K, Derejczyk J, Franceschi C, Gabryelewicz T, Galus K, Grodzicki T, Gross R, Klich-Raczka A, Luczywek E, Passeri G, Pfeffer A, Pruszynski J, Radziszewska E, Sikora E, Sosnowski M, Styczynska M, Wasiak B, Wieczorowska-Tobis K, Zyczkowska J, Kuznicki J. Polish Centenarians Program “PolStu99” – search for longevity promoting factors (in Polish). 2000. Gerontologia, 8, 35-39. details
  • Bujnicki JM, Rychlewski L. Prediction of a common fold for all four subunits of the yeast tRNA splicing endonuclease: implications for the evolution of the EndA/Sen family.. 2000. FEBS Lett, 486, 328-9. details
  • Bujnicki JM, Rychlewski L. Prediction of a novel RNA 2'-O-ribose methyltransferase subfamily encoded by the Escherichia coli YgdE open reading frame and its orthologs. 2000. Acta Microbiol Pol, 49, 253-60. details
  • Bujnicki JM, Radlinska M, Rychlewski L. Atomic model of the 5-methylcytosine-specific restriction enzyme McrA reveals an atypical zinc finger and structural similarity to betabetaalphaMe endonucleases. 2000. Mol Microbiol, 37, 1280-1. details
  • Bujnicki JM. Sequence, structural, and evolutionary analysis of prokaryotic ribosomal protein L11 methyltransferases.. 2000. Acta Microbiol Pol, 49, 19-29. details
  • Bujnicki JM. Phylogenomic analysis of 16S rRNA:(guanine-N2) methyltransferases suggests new family members and reveals highly conserved motifs and a domain structure similar to other nucleic acid amino-methyltransferases.. 2000. FASEB J, 14, 2365-8. details