Publications

All publications

2013

Dudzik J, Chang WC, Kannan AM, Filipek S, Viswanathan S, Li P, Renugopalakrishnan V, Audette GF

Cross-linked glucose oxidase clusters for biofuel cell anode catalysts

Biofabrication

Wu Y, Yuan S, Chen S, Wu D, Chen J, Wu J

Enhancing the production of galacto-oligosaccharides by mutagenesis of Sulfolobus solfataricus β-galactosidase

Food Chem

Pulawski W, Filipek S, Zwolinska A, Debinski A, Krzysko K, Garduño-Juárez R, Viswanathan S, Renugopalakrishnan V

Low-temperature molecular dynamics simulations of horse heart cytochrome c and comparison with inelastic neutron scattering data

Eur Biophys J

Latek D, Pasznik P, Carlomagno T, Filipek S

Towards Improved Quality of GPCR Models by Usage of Multiple Templates and Profile-Profile Comparison

PLoS One

2012

Pulawski W, Ghoshdastider U, Andrisano V, Filipek S

Ubiquitous amyloids

Appl Biochem Biotechnol

Naldi M, Fiori J, Pistolozzi M, Drake AF, Bertucci C, Wu R, Mlynarczyk K, Filipek S, De Simone A, Andrisano V

Amyloid β-Peptide 25-35 Self-Assembly and Its Inhibition: A Model Undecapeptide System to Gain Atomistic and Secondary Structure Details of the Alzheimer's Disease Process and Treatment

ACS Chem Neurosci

Yuan S, Ghoshdastider U, Trzaskowski B, Latek D, Debinski A, Pulawski W, Wu R, Gerke V, Filipek S

The Role of Water in Activation Mechanism of Human N-Formyl Peptide Receptor 1 (FPR1) Based on Molecular Dynamics Simulations

PLoS One

Trzaskowski B, Latek D, Yuan S, Ghoshdastider U, Debinski A, Filipek S

Action of Molecular Switches in GPCRs - Theoretical and Experimental Studies

Curr Med Chem

2011

Audette GF, Lombardo S, Dudzik J, Arruda TM, Kolinski M, Filipek S, Mukerjee S, Kannan AM, Thavasi V, Ramakrishna S, Chin M, Somasundaran P, Viswanathan S, Keles RS, Renugopalakrishnan V

Modeling of ligand binding to G protein coupled receptors: cannabinoid CB(1), CB (2) and adrenergic β (2)AR.

Materials Today

Latek D, Kolinski M, Ghoshdastider U, Debinski A, Bombolewski R, Plazinska A, Jozwiak K, Filipek S

Modeling of ligand binding to G protein coupled receptors: cannabinoid CB(1), CB (2) and adrenergic β (2)AR

J Mol Model

Koch R, Lipton AS, Filipek S, Renugopalakrishnan V

Arginine interactions with anatase TiO(2) (100) surface and the perturbation of (49)Ti NMR chemical shifts - a DFT investigation: relevance to Renu-Seeram bio solar cell

J Mol Model

2010

Kolinski M, Filipek S

Study of a structurally similar kappa opioid receptor agonist and antagonist pair by molecular dynamics simulations.

J Mol Model

Zurawska A, Urbanski J, Matuliene J, Baraniak J, Klejman MP, Filipek S, Matulis D, Bieganowski P

Mutations that increase both Hsp90 ATPase activity in vitro and Hsp90 drug resistance in vivo.

Biochim Biophys Acta

2009

M. Kolinfski, S. Filipek

Studies of the Activation Steps Concurrent to Ligand Binding in δOR and κOR Opioid Receptors Based on Molecular Dynamics Simulations

TOSBJ

Kilanczyk E, Filipek S, Jastrzebska B, Filipek A

CacyBP/SIP binds ERK1/2 and affects transcriptional activity of Elk-1

Biochem Biophys Res Commun

Austermann J, Nazmi AR, Heil A, Fritz G, Kolinski M, Filipek S, Gerke V

Generation and characterization of a novel, permanently active S100P mutant.

Biochim Biophys Acta

Thavasi V, Lazarova T, Filipek S, Kolinski M, Querol E, Kumar A, Ramakrishna S, Padrós E, Renugopalakrishnan V

Study on the feasibility of bacteriorhodopsin as bio-photosensitizer in excitonic solar cell: a first report.

J Nanosci Nanotechnol

Kannan AM, Renugopalakrishnan V, Filipek S, Li P, Audette GF, Munukutla L

Bio-batteries and bio-fuel cells: leveraging on electronic charge transfer proteins.

J Nanosci Nanotechnol

V. Renugopalakrishnan, A. M. Kannan, S. Srinivasan, V. Thavasi, S. Ramakrishna, P. Li, A. Mershin, S. Filipek, A. Kumar, J. Dutta, A. Jaya, L. Munukutla, S. Velumani, G. F. Audette

“Nanomaterials for Energy Convertion Applications”

\"Nanomaterials for Energy Storage Applications\"

S. Filipek

“Bioinformatyka strukturalna białek transbłonowych”

Kosmos

Park PS, Sapra KT, Jastrzebska B, Maeda T, Maeda A, Pulawski W, Kono M, Lem J, Crouch RK, Filipek S, Müller DJ, Palczewski K

Modulation of molecular interactions and function by rhodopsin palmitylation

Biochemistry

J.S. Jaworski, A. Kosson, S. Filipek, M. Kolinski, D. Kuck

Properties of Radical Anions of Triptindanones and Indanones: Electronic Communication and Stability of Ion Pairs Containing Lithium Cations

J. Phys. Chem. C

2008

Kolinski M, Filipek S.

Molecular dynamics of mu opioid receptor complexes with agonists and antagonists

The Open Struct. Biol. J.

Jozwiak K, Krzysko KA, Bojarski L, Gacia M, Filipek S

Molecular models of the interface between anterior pharynx-defective protein 1 (APH-1) and presenilin involving GxxxG motifs

ChemMedChem

Bhatia P, Kolinski M, Moaddel R, Jozwiak K, Wainer IW

Determination and modelling of stereoselective interactions of ligands with drug transporters: a key dimension in the understanding of drug disposition

Xenobiotica

Stephen R, Filipek S, Palczewski K, Sousa MC

Ca2+ -dependent regulation of phototransduction.

Photochem Photobiol

Majewski T, Lee S, Jeong J, Yoon DS, Kram A, Kim MS, Tuziak T, Bondaruk J, Lee S, Park WS, Tang KS, Chung W, Shen L, Ahmed SS, Johnston DA, Grossman HB, Dinney CP, Zhou JH, Harris RA, Snyder C, Filipek S, Narod SA, Watson P, Lynch HT, Gazdar A, Bar-Eli M,

Understanding the development of human bladder cancer by using a whole-organ genomic mapping strategy.

Lab Invest

2007

Golan MP, Styczyńska M, Jóźwiak K, Walecki J, Maruszak A, Pniewski J, Lugiewicz R, Filipek S, Zekanowski C, Barcikowska M

Early-onset Alzheimer's disease with a de novo mutation in the presenilin 1 gene

Exp Neurol

Krzysko KA, Kolinski M, Filipek S.

Molecular modelling of the complex of oligomeric rhodopsin and its G protein.

J Phys Condens Matter

Lee S, Jeong J, Majewski T, Scherer SE, Kim MS, Tuziak T, Tang KS, Baggerly K, Grossman HB, Zhou JH, Shen L, Bondaruk J, Ahmed SS, Samanta S, Spiess P, Wu X, Filipek S, McConkey D, Bar-Eli M, Issa JP, Benedict WF, Czerniak B

Forerunner genes contiguous to RB1 contribute to the development of in situ neoplasia.

Proc Natl Acad Sci U S A

Park PS, Sapra KT, Koliński M, Filipek S, Palczewski K, Muller DJ

Stabilizing effect of Zn2+ in native bovine rhodopsin

J Biol Chem

2006

Cieplak M, Filipek S, Janovjak H, Krzyśko KA

Pulling single bacteriorhodopsin out of a membrane: Comparison of simulation and experiment.

Biochim Biophys Acta

Jozwiak K, Zekanowski C, Filipek S

Linear patterns of Alzheimer's disease mutations along alpha-helices of presenilins as a tool for PS-1 model construction

J Neurochem

Modzelewska A, Filipek S, Palczewski K, Park PS

Arrestin interaction with rhodopsin: conceptual models.

Cell Biochem Biophys

Tanuj Sapra K, Park PS, Filipek S, Engel A, Müller DJ, Palczewski K

Detecting molecular interactions that stabilize native bovine rhodopsin

J Mol Biol

Zekanowski C, Golan MP, Krzyśko KA, Lipczyńska-Łojkowska W, Filipek S, Kowalska A, Rossa G, Pepłońska B, Styczyńska M, Maruszak A, Religa D, Wender M, Kulczycki J, Barcikowska M, Kuźnicki J.

Two novel presenilin 1 gene mutations connected with frontotemporal dementia-like clinical phenotype: genetic and bioinformatic assessment.

Exp Neurol.

Zhu L, Imanishi Y, Filipek S, Alekseev A, Jastrzebska B, Sun W, Saperstein DA, Palczewski K

Autosomal recessive retinitis pigmentosa and E150K mutation in the opsin gene.

J Biol Chem

Jaworski JS, Cembor M, Koliński M

Electrostatic model of bond dissociation energies in polyhalogen methanes

J Phys Org Chem

2005

Filipek S

Organization of rhodopsin molecules in native membranes of rod cells--an old theoretical model compared to new experimental data.

J Mol Model

Filipek S, Modzelewska A, Krzysko KA

Functional oligomers of rhodopsin – a G protein-coupled receptor template

Joint Meeting on Medical Chemistry

Sokal I, Dupps WJ, Grassi MA, Brown J Jr, Affatigato LM, Roychowdhury N, Yang L, Filipek S, Palczewski K, Stone EM, Baehr W

A novel GCAP1 missense mutation (L151F) in a large family with autosomal dominant cone-rod dystrophy (adCORD)

Invest Ophthalmol Vis Sci

2004

Filipek S, Krzysko KA , Fotiadis D, Liang Y, Saperstein DA, Engel A, Palczewski K

A concept for G protein activation by G protein-coupled receptor dimers: the transducin/rhodopsin interface

Photochem Photobiol Sci

Fotiadis D, Liang Y, Filipek S, Saperstein DA, Engel A, Palczewski K

The G protein-coupled receptor rhodopsin in the native membrane

FEBS Lett

Imanishi Y, Yang L, Sokal I, Filipek S, Palczewski K, Baehr W

Diversity of guanylate cyclase-activating proteins (GCAPs) in teleost fish: characterization of three novel GCAPs (GCAP4, GCAP5, GCAP7) from zebrafish (Danio rerio) and prediction of eight GCAPs (GCAP1-8) in pufferfish (

J Mol Evol

Jastrzebska B, Maeda T, Zhu L, Fotiadis D, Filipek S, Engel A, Stenkamp RE, Palczewski K

Functional characterization of rhodopsin monomers and dimers in detergents

J Biol Chem

Liang Y, Fotiadis D, Maeda T, Maeda A, Modzelewska A, Filipek S, Saperstein DA, Engel A, Palczewski K

Rhodopsin signaling and organization in heterozygote rhodopsin knockout mice

J Biol Chem

Park PS, Filipek S, Wells JW, Palczewski K

Oligomerization of G protein-coupled receptors: past, present, and future.

Biochemistry

Suda K, Filipek S, Palczewski K, Engel A, Fotiadis D

The supramolecular structure of the GPCR rhodopsin in solution and native disc membranes.

Mol Membr Biol

Zhu L, Jang GF, Jastrzebska B, Filipek S, Pearce-Kelling SE, Aguirre GD, Stenkamp RE, Acland GM, Palczewski K

A naturally occurring mutation of the opsin gene (T4R) in dogs affects glycosylation and stability of the G protein-coupled receptor.

J Biol Chem

Zekanowski C, Religa D, Graff C, Filipek S, Kuźnicki J

Genetic aspects of Alzheimer's disease

Acta Neurobiol Exp (Wars)

2003

Filipek S, Teller DC, Palczewski K, Stenkamp R

The crystallographic model of rhodopsin and its use in studies of other G protein-coupled receptors.

Annu Rev Biophys Biomol Struct

Fotiadis D, Liang Y, Filipek S, Saperstein DA, Engel A, Palczewski K

Atomic-force microscopy: Rhodopsin dimers in native disc membranes

Nature

Fritze O, Filipek S, Kuksa V, Palczewski K, Hofmann KP, Ernst OP

Role of the conserved NPxxY(x)5,6F motif in the rhodopsin ground state and during activation.

Proc Natl Acad Sci U S A

Liang Y, Fotiadis D, Filipek S, Saperstein DA, Palczewski K, Engel A

Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes.

J Biol Chem

Liang Y, Fotiadis D, Filipek S, Saperstein DA, Palczewski K, Engel A

Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes

J Biol Chem

Maeda T, Van Hooser JP, Driessen CA, Filipek S, Janssen JJ, Palczewski K

Evaluation of the role of the retinal G protein-coupled receptor (RGR) in the vertebrate retina in vivo.

J Neurochem

Mirzadegan T, Benkö G, Filipek S, Palczewski K

Sequence analyses of G-protein-coupled receptors: similarities to rhodopsin.

Biochemistry

Noorwez SM, Kuksa V, Imanishi Y, Zhu L, Filipek S, Palczewski K, Kaushal S

Pharmacological chaperone-mediated in vivo folding and stabilization of the P23H-opsin mutant associated with autosomal dominant retinitis pigmentosa.

J Biol Chem

Schadel SA, Heck M, Maretzki D, Filipek S, Teller DC, Palczewski K, Hofmann KP

Ligand channeling within a G-protein-coupled receptor. The entry and exit of retinals in native opsin.

J Biol Chem

Nowotny M, Spiechowicz M, Jastrzebska B, Filipek A, Kitagawa K, Kuznicki J

Calcium-regulated interaction of Sgt1 with S100A6 (calcyclin) and other S100 proteins

J Biol Chem.

2002

Kuksa V, Bartl F, Maeda T, Jang GF, Ritter E, Heck M, Van Hooser JP, Liang Y, Filipek S, Gelb MH, Hofmann KP, Palczewski K

Biochemical and physiological properties of rhodopsin regenerated with 11-cis-6-ring- and 7-ring-retinals.

J Biol Chem