2024

Publikacja Cryo-EM structure of raiA ncRNA from Clostridium reveals a new RNA 3D fold. Goud Badepally N, Rocha de Moura T, Purta E, Baulin EF, Bujnicki JM. J Mol Biol. 2024 Publikacja The three YTHDF paralogs and VIRMA are strong cross-histotype tumor driver candidates among m6A core genes. Destefanis E, Sighel D, Dalfovo D, Gilmozzi R, Broso F, Cappannini A, Bujnicki JM, Romanel A, Dassi E, Quattrone A. NAR Cancer. 2024 Publikacja Loss of Stim2 in zebrafish induces glaucoma-like phenotype. Baranykova S, Gupta RK, Kajdasz A, Wasilewska I, Macias M, Szybinska A, Węgierski T, Nahia KA, Mondal SS, Winata CL, Kuźnicki J, Majewski L. Sci Rep. 2024 Publikacja The neuroprotective effect of short-chain fatty acids against hypoxia-reperfusion injury. Harijan AK, Kalaiarasan R, Ghosh AK, Jain RP, Bera AK. Mol Cell Neurosci. 2024 Publikacja Modeling of mRNA deadenylation rates reveal a complex relationship between mRNA deadenylation and decay. Czarnocka-Cieciura A, Poznański J, Turtola M, Tomecki R, Krawczyk PS, Mroczek S, Orzeł W, Saha U, Jensen TH, Dziembowski A, Tudek A. EMBO J. 2024 Publikacja HSP70 inhibits CHIP E3 ligase activity to maintain germline function in Caenorhabditis elegans. Thapa P, Chikale RV, Szulc NA, Pandrea MT, Sztyler A, Jaggi K, Niklewicz M, Serwa RA, Hoppe T, Pokrzywa W. J Biol Chem. 2024 Publikacja Inflammation in Older Poles with Localized and Widespread Chronic Pain—Results from a Population-Based PolSenior Study. Chudek A, Kotyla P, Kozak-Szkopek E, Mossakowska M, Wieczorowska-Tobis K, Sulicka-Grodzicka J, Olszanecka-Glinianowicz M, Chudek J, Owczarek AJ. J Clin Med. 2024 Publikacja Association between dietary variety and anthropometric parameters in community-dwelling older adults: results of a population-based PolSenior study. Bylinowska J, Wierzbicka E, Białecka-Dębek A, Mossakowska M, Szybalska A, Pietruszka B. Ann Agric Environ Med. 2024 Publikacja The molecular dissection of TRIM25's RNA-binding mechanism provides key insights into its antiviral activity. Álvarez L, Haubrich K, Iselin L, Gillioz L, Ruscica V, Lapouge K, Augsten S, Huppertz I, Choudhury NR, Simon B, Masiewicz P, Lethier M, Cusack S, Rittinger K, Gabel F, Leitner A, Michlewski G, Hentze MW, Allain FHT, Castello A, Hennig J. Nat Commun. 2024 Publikacja Transcriptome-Wide Analysis of mRNA Adenylation Status in Yeast Using Nanopore Sequencing. Krawczyk PS, Tudek A, Mroczek S, Dziembowski A. Methods Mol Biol. 2024 Publikacja Advances in the field of RNA 3D structure prediction and modeling, with purely theoretical approaches, and with the use of experimental data. Mukherjee S, Moafinejad SN, Badepally NG, Merdas K, Bujnicki JM. Structure. 2024 Publikacja Fibroblast growth factor 21 inversely correlates with survival in elderly population - the results of the Polsenior2 study. Handzlik G, Owczarek AJ, Więcek A, Mossakowska M, Zdrojewski T, Chudek A, Olszanecka-Glinianowicz M, Chudek J. Aging (Albany NY). 2024 Publikacja Suitability of Adenosine Derivatives in Improving the Activity and Stability of Cytochrome c under Stress: Insights into the Effect of Phosphate Groups. Bharadwaj P, Shet SM, Bisht M, Sarkar DK, Franklin G, Kotrappanavar NS, Mondal D. J Phys Chem B. 2024 Publikacja General and abdominal adiposity and hypertension in eight world regions: a pooled analysis of 837 population-based studies with 7·5 million participants. NCD Risk Factor Collaboration (NCD-RisC) within Mossakowska M. Lancet. 2024 Publikacja Study of Biological Effects Induced in Solid Tumors by Shortened-Duration Thermal Ablation Using High-Intensity Focused Ultrasound. Kaplińska-Kłosiewicz PM, Fura Ł, Kujawska T, Andrzejewski K, Kaczyńska K, Strzemecki D, Sulejczak M, Chrapusta SJ, Macias M, Sulejczak D. Cancers (Basel). 2024 Publikacja Whole-Exome Analysis for Polish Caucasian Patients with Retinal Dystrophies and the Creation of a Reference Genomic Database for the Polish Population. Matczyńska E, Szymańczak R, Stradomska K, Łyszkiewicz P, Jędrzejowska M, Kamińska K, Beć-Gajowniczek M, Suchecka E, Zagulski M, Wiącek M, Wylęgała E, Machalińska A, Mossakowska M, Puzianowska-Kuźnicka M, Teper S, Boguszewska-Chachulska A. Genes (Basel). 2024 Publikacja Reinforcing Tunnel Network Exploration in Proteins Using Gaussian Accelerated Molecular Dynamics. Mandal N, Surpeta B, Brezovsky J. J Chem Inf Model. 2024 Publikacja Optogenetic induction of mechanical muscle stress identifies myosin regulatory ubiquitin ligase NHL-1 in C. elegans. Kutzner CE, Bauer KC, Lackmann JW, Acton RJ, Sarkar A, Pokrzywa W, Hoppe T. Nat Commun. 2024 Publikacja Floxuridine supports UPS independent of germline signaling and proteostasis regulators via involvement of detoxification in C. elegans. Dubey AA, Sarkar A, Milcz K, Szulc NA, Thapa P, Piechota M, Serwa RA, Pokrzywa W. PLoS Genet. 2024 Publikacja Structural and biochemical characterization of cauliflower mosaic virus reverse transcriptase. Prabaharan C, Figiel M, Szczepanowski RH, Skowronek K, Zajko W, Thangaraj V, Chamera S, Nowak E, Nowotny M. J Biol Chem. 2024 Publikacja Incorporating Prior Knowledge in the Seeds of Adaptive Sampling Molecular Dynamics Simulations of Ligand Transport in Enzymes with Buried Active Sites. Sarkar DK, Surpeta B, Brezovsky J. J Chem Theory Comput. 2024 Publikacja Protein memory? Bochtler M. Bioessays. 2024 Publikacja Structural analysis of the BisI family of modification dependent restriction endonucleases. Szafran K, Rafalski D, Skowronek K, Wojciechowski M, Kazrani AA, Gilski M, Xu SY, Bochtler M. Nucleic Acids Res. 2024 Publikacja Cytosine analogues as DNA methyltransferase substrates. Wojciechowski M, Czapinska H, Krwawicz J, Rafalski D, Bochtler M. Nucleic Acids Res. 2024 Publikacja SARS-CoV-2 inhibitory potential of fish oil-derived 2-pyrone compounds by acquiring linoleic acid binding site on the spike protein. Duragkar N, Chikhale R, Piechota M, Danta CC, Gandhale P, Itankar P, Chikhale S, Gurav N, Khan MS, Pokrzywa W, Thapa P, Bryce R, Gurav S. Int J Biol Macromol. 2024 Publikacja Hyperactive mTORC1 disrupts habenula function and light preference in zebrafish model of Tuberous sclerosis complex. Doszyn O, Kedra M, Zmorzynska J. iScience. 2024 Publikacja Are there double knots in proteins? Prediction and in vitro verification based on TrmD-Tm1570 fusion from C. nitroreducens. Perlinska AP, Nguyen ML, Pilla SP, Staszor E, Lewandowska I, Bernat A, Purta E, Augustyniak R, Bujnicki JM, Sulkowska JI. Front Mol Biosci. 2024 Publikacja TENT5-mediated polyadenylation of mRNAs encoding secreted proteins is essential for gametogenesis in mice. Brouze M, Czarnocka-Cieciura A, Gewartowska O, Kusio-Kobiałka M, Jachacy K, Szpila M, Tarkowski B, Gruchota J, Krawczyk P, Mroczek S, Borsuk E, Dziembowski A. Nat Commun. 2024 Preprint Computational analysis of congenital heart disease associated SNPs: Unveiling their impact on the gene regulatory system. Vashisht S, Parisi C, Winata CL. medRxiv. 2024 Preprint The molecular dissection of TRIM25‘s RNA-binding mechanism provides key insights into its antiviral activity. Simon B, Castello A, Allain FHT, Hentze MW, Michlewski G, and 16 more authors Research Square. 2024