All publications

Research groups

Laboratory of Cell Biology

Laboratory of Structural Biology

Laboratory of Bioinformatics and Protein Engineering

Laboratory of Molecular and Cellular Neurobiology

Laboratory of Neurodegeneration

Laboratory of Iron Homeostasis

Laboratory of Protein Structure

Laboratory of Protein Metabolism

Laboratory of Zebrafish Developmental Genomics

Laboratory of Biomolecular Interactions and Transport

Laboratory of RNA Biology - ERA Chairs Group

Laboratory of RNA-Protein Interactions - Dioscuri Centre

Laboratory of Prokaryotic Gene Regulation

Laboratory of Cellular Genomics

Laboratory of Cellular Proteostasis

Projects outside research groups

PolSenior Project

Aurezyna Project

Core Facilities

Core Facility

Zebrafish Core Facility

Former labs & projects

Department of Molecular Biology

Laboratory of Biomodelling

Laboratory of Cell Cortex Mechanisms

Laboratory of Mitochondrial Biogenesis

Cilia and leukemia genetics studies

Other

Other

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2001

Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles. Bujnicki JM, Rychlewski L J Mol Microbiol Biotechnol. 2001 Reassignment of specificities of two cap methyltransferase domains in the reovirus lambda 2 protein Bujnicki JM, Rychlewski L Genome Biol. 2001 Unusual evolutionary history of the tRNA splicing endonuclease EndA: relationship to the LAGLIDADG and PD-(D/E)XK deoxyribonucleases. Bujnicki JM, Rychlewski L Protein Sci. 2001 Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs Bujnicki JM, Rychlewski L Gene. 2001 Sequence analysis and structure prediction of aminoglycoside-resistance 16S rRNA:m7G methyltransferases Bujnicki JM, Rychlewski L Acta Microbiol Pol. 2001 Three-dimensional modeling of the I-TevI homing endonuclease catalytic domain, a GIY-YIG superfamily member, using NMR restraints and Monte Carlo dynamics. Bujnicki JM, Rotkiewicz P, Kolinski A, Rychlewski L Protein Eng. 2001 Cloning of the Haemophilus influenzae Dam methyltransferase and analysis of its relationship to the Dam methyltransferase encoded by the HP1 phage Bujnicki JM, Radlinska M, Zaleski P, Piekarowicz A Acta Biochim Pol. 2001 Polyphyletic evolution of type II restriction enzymes revisited: two independent sources of second-hand folds revealed Bujnicki JM, Radlinska M, Rychlewski L Trends Biochem Sci. 2001 Cloning and characterization of M.LmoA118I, a novel DNA:m4C methyltransferase from the Listeria monocytogenes phage A118, a close homolog of M.NgoMXV Bujnicki JM, Radlinska M Acta Microbiol Pol. 2001 mRNA:guanine-N7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships Bujnicki JM, Feder M, Radlinska M, Rychlewski L BMC Bioinformatics. 2001 LiveBench-2: large-scale automated evaluation of protein structure prediction servers. Bujnicki JM, Elofsson A, Fischer D, Rychlewski L Proteins. 2001 LiveBench-1: continuous benchmarking of protein structure prediction servers Bujnicki JM, Elofsson A, Fischer D, Rychlewski L Protein Sci. 2001 Structure prediction meta server Bujnicki JM, Elofsson A, Fischer D, Rychlewski L Bioinformatics. 2001 A model of structure and action of Sau3AI restriction endonuclease that comprises two MutH-like endonuclease domains within a single polypeptide. Bujnicki JM Acta Microbiol Pol. 2001 Understanding the evolution of restriction-modification systems: clues from sequence and structure comparisons. Bujnicki JM Acta Biochim Pol. 2001 In silico analysis of the tRNA:m1A58 methyltransferase family: homology-based fold prediction and identification of new members from Eubacteria and Archaea Bujnicki JM FEBS Lett. 2001

2000

Prediction of a common fold for all four subunits of the yeast tRNA splicing endonuclease: implications for the evolution of the EndA/Sen family. Bujnicki JM, Rychlewski L FEBS Lett. 2000 Prediction of a novel RNA 2'-O-ribose methyltransferase subfamily encoded by the Escherichia coli YgdE open reading frame and its orthologs Bujnicki JM, Rychlewski L Acta Microbiol Pol. 2000 Atomic model of the 5-methylcytosine-specific restriction enzyme McrA reveals an atypical zinc finger and structural similarity to betabetaalphaMe endonucleases Bujnicki JM, Radlinska M, Rychlewski L Mol Microbiol. 2000 Sequence, structural, and evolutionary analysis of prokaryotic ribosomal protein L11 methyltransferases. Bujnicki JM Acta Microbiol Pol. 2000 Phylogenomic analysis of 16S rRNA:(guanine-N2) methyltransferases suggests new family members and reveals highly conserved motifs and a domain structure similar to other nucleic acid amino-methyltransferases. Bujnicki JM FASEB J. 2000