QRNAS: software tool for refinement of nucleic acid structures. Stasiewicz J, Mukherjee S, Nithin C, Bujnicki JM. BMC Struct Biol. . 2019 RNAcentral: a hub of information for non-coding RNA sequences. The RNAcentral Consortium (Bujnicki JM, Boccaletto P) Nucleic Acids Res. . 2019 Petri net-based model of the human DNA base excision repair pathway. Radom M, Machnicka MA, Krwawicz J, Bujnicki JM, Formanowicz P PLoS One. 2019 RNA 3D structure prediction guided by independent folding of homologous sequences. Magnus M, Kappel K, Das R, Bujnicki JM BMC Bioinformatics. 2019 Specific interaction of zinc finger protein Com with RNA and the crystal structure of a self-complementary RNA duplex recognized by Com. Nowacka M, Fernandes H, Kiliszek A, Bernat A, Lach G, Bujnicki JM. PLoS One. 2019 Crystal Structure and Directed Evolution of Specificity of NlaIV Restriction Endonuclease. Czapinska H, Siwek W, Szczepanowski RH, Bujnicki JM, Bochtler M, Skowronek KJ. J Mol Biol.. 2019 Structural bases of peptidoglycan recognition by lysostaphin SH3b domain. Mitkowski P, Jagielska E, Nowak E, Bujnicki JM, Stefaniak F, Niedziałek D, Bochtler M, Sabała I. Sci Rep.. 2019 Computational modeling of RNA 3D structure based on experimental data. Ponce-Salvatierra A, Astha, Merdas K, Chandran N, Ghosh P, Mukherjee S, Bujnicki JM. Biosci Rep. . 2019 Discovery of selective, orally bioavailable inhibitor of mouse chitotriosidase. Mazur M, Bartoszewicz A, Dymek B, Salamon M, Andryianau G, Kowalski M, Olejniczak S, Matyszewski K, Pluta E, Borek B, Stefaniak F, Zagozdzon A, Mazurkiewicz M, Koralewski R, Czestkowski W, Piotrowicz M, Niedziejko P, Gruza MM, Dzwonek K, Golebiowski A, Golab J, Olczak J. 28(3). 2018 The OB-fold proteins of the Trypanosoma brucei editosome execute RNA-chaperone activity. Voigt C, Dobrychlop M, Kruse E, Czerwoniec A, Kasprzak JM, Bytner P, Campo CD, Leeder WM, Bujnicki JM, Göringer HU. Nucleic Acids Res.. 2018 Positioning Europe for the EPITRANSCRIPTOMICS challenge. Jantsch MF et al. (Bujnicki J, Purta E) RNA Biol.. 2018 Human RNA cap1 methyltransferase CMTr1 cooperates with RNA helicase DHX15 to modify RNAs with highly structured 5' termini. Toczydlowska-Socha D, Zielinska MM, Kurkowska M, Astha, Almeida CF, Stefaniak F, Purta E, Bujnicki JM. Philos Trans R Soc Lond B Biol Sci.. 2018 Crystal structure of human Acinus RNA recognition motif domain. Fernandes H, Czapinska H, Grudziaz K, Bujnicki JM, Nowacka M. PeerJ.. 2018 Bioinformatics Tools and Benchmarks for Computational Docking and 3D Structure Prediction of RNA-Protein Complexes. Nithin C, Ghosh P, Bujnicki JM. Genes (Basel). 2018 Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition. Kumari P, Aeschimann F, Gaidatzis D, Keusch JJ, Ghosh P, Neagu A, Pachulska-Wieczorek K, Bujnicki JM, Gut H, Großhans H, Ciosk R. Nat Commun.. 2018 Novel inhibitors of the rRNA ErmC' methyltransferase to block resistance to macrolides, lincosamides, streptogramine B antibiotics. Foik IP, Tuszynska I, Feder M, Purta E, Stefaniak F, Bujnicki JM. Eur J Med Chem.. 2018 Antisense and yet sensitive: Copy number control of rolling circle-replicating plasmids by small RNAs. Pluta R, Espinosa M. Wiley Interdiscip Rev RNA. 2018 MODOMICS: a database of RNA modification pathways. 2017 update. Boccaletto P, Machnicka MA, Purta E, Piatkowski P, Baginski B, Wirecki TK, de Crécy-Lagard V, Ross R, Limbach PA, Kotter A, Helm M, Bujnicki JM. Nucleic Acids Res.. 2018 RNArchitecture: a database and a classification system of RNA families, with a focus on structural information. Boccaletto P, Magnus M, Almeida C, Zyla A, Astha A, Pluta R, Baginski B, Jankowska E, Dunin-Horkawicz S, Wirecki TK, Boniecki MJ, Stefaniak F, Bujnicki JM. Nucleic Acids Res.. 2018 Impact of the structural integrity of the three-way junction of adenovirus VAI RNA on PKR inhibition. Dzananovic E, Astha, Chojnowski G, Deo S, Booy EP, Padilla-Meier P, McEleney K, Bujnicki JM, Patel TR, McKenna SA. PLoS One. 2017 Occurrence and stability of lone pair-π stacking interactions between ribose and nucleobases in functional RNAs. Chawla M, Chermak E, Zhang Q, Bujnicki JM, Oliva R, Cavallo L. Nucleic Acids Res.. 2017 SupeRNAlign: a new tool for flexible superposition of homologous RNA structures and inference of accurate structure-based sequence alignments. Piątkowski P, Jabłońska J, Żyła A, Niedziałek, Matelska D, Jankowska E, Waleń T, Dawson WK, Bujnicki JM. Nucleic Acids Res.. 2017 Mutations in human AID differentially affect its ability to deaminate cytidine and 5-methylcytidine in ssDNA substrates in vitro Budzko L, Jackowiak P, Kamel K, Sarzynska J, Bujnicki JM, Figlerowicz M Sci Rep. 2017 Defining the crucial domain and amino acid residues in bacterial Lon protease for DNA binding and processing of DNA-interacting substrates Karlowicz A, Wegrzyn K, Gross M, Kaczynska D, Ropelewska M, Siemiątkowska M, Bujnicki JM, Konieczny I J Biol Chem. 2017 RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Miao Z, Adamiak RW, Antczak M, Batey RT, Becka A, Biesiada M, Boniecki MJ, Bujnicki JM, Chen S, Cheng CY, Chou F, Ferré-D'Amaré AR, Das R, Dawson WK, Ding F, Dokholyan NV, Dunin-Horkawicz S, Geniesse C, Kappel K, Kladwang W, Krokhotin A, Lach GE, Major F, Mann TH, Magnus M, Pachulska-Wieczorek K, Patel DJ, Piccirilli JA, Popenda M, Purzycka KJ, Ren A, Rice GM, Santalucia J Jr, Sarzynska J, Szachniuk M, Tandon A, Trausch JJ, Tian S, Wang J, Weeks KM, Williams B II, Xiao Y, Xu X, Zhang D, Zok T, Westhof E RNA. 2017 Structural studies of RNA-protein complexes: A hybrid approach involving hydrodynamics, scattering and computational methods Patel T, Chojnowski G, Astha, Koul A, McKenna S, Bujnicki JM Methods. 2017 Sequence-specific endoribonucleases. Głów D, Nowacka M, Skowronek KJ, Bujnicki JM. Postępy Biochemii. 2016 Coarse-grained modeling of RNA 3D structure Dawson WK, Maciejczyk M, Jankowska EJ, Bujnicki JM Methods. 2016 tRNAmodpred: A computational method for predicting posttranscriptional modifications in tRNAs Machnicka MA, Dunin-Horkawicz S, de Crécy-Lagard V, Bujnicki JM Methods. 2016 Asymmetric DNA methylation by dimeric EcoP15I DNA methyltransferase Urulangodi M, Dhanaraju R, Gupta K, Roy RP, Bujnicki JM, Rao DN Biochimie. 2016