Functional and bioinformatics analysis of two Campylobacter jejuni homologs of the thiol-disulfide oxidoreductase, DsbA Grabowska AD, Wywiał E, Dunin-Horkawicz S , Lasica AM, Wösten MM, Nagy-Staroń A, Godlewska R, Bocian-Ostrzycka K, Pieńkowska K, Laniewski P, Bujnicki JM, van Putten JP, Jagusztyn-Krynicka EK PLoS One.. 2014 ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes Walen T, Chojnowski G, Gierski P,Bujnicki JM, Nucleic Acids Res.. 2014 Structural and degradative aspects of ornithine decarboxylase antizyme inhibitor 2 Ramos-Molina B, Lambertos A, Lopez-Contreras AJ, Kasprzak JM, Czerwoniec A, Bujnicki JM, Cremades A, Penafiel R FEBS Open Bio.. 2014 Female-specific gene expression in dioecious liverwort Pellia endiviifolia is developmentally regulated and connected to archegonia production Sierocka I, Kozlowski LP, Bujnicki JM, Jarmolowski A, Szweykowska-Kulinska Z BMC Plant Biol.. 2014 Computational modeling of RNA 3D structures, with the aid of experimental restraints Magnus M, Matelska D, Lach G, Chojnowski G, Boniecki MJ, Purta E, Dawson W, Dunin-Horkawicz S, Bujnicki JM RNA Biol.. 2014 Automated modeling of RNA 3D structure Rother K, Rother M, Skiba P, Bujnicki JM Methods Mol Biol. 2014 Structural basis of the methylation specificity of R.DpnI Mierzejewska K, Siwek W, Czapinska H, Kaus-Drobek M, Radlinska M, Skowronek K, Bujnicki JM, Dadlez M, Bochtler M Nucleic Acids Res.. 2014 The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification Majorek KA, Dunin-Horkawicz S, Steczkiewicz K, Muszewska A, Nowotny M, Ginalski K, Bujnicki JM Nucleic Acids Res.. 2014 Potassium channel in the mitochondria of human keratinocytes Toczyłowska-Mamińska R, Olszewska A, Laskowski M, Bednarczyk P, Skowronek K, Szewczyk A J Invest Dermatol. 2014 Labeling of platelet-derived growth factor by reversible biotinylation to visualize its endocytosis by microscopy Sadowski Ł, Jastrzębski K, Purta E, Hellberg C, Miaczynska M Methods Enzymol.. 2014 New simple efficient algorithms computing powers and runs in strings Crochemore M, Iliopoulos CS, Kubica M, Radoszewski J, Rytter W, Stencel K, Walen T Discrete Applied Mathematics. 2014 Structural analysis of human 2′-O-ribose methyltransferases involved in mRNA cap structure formation Smietanski M, Werner M, Purta E, Kaminska KH, Stepinski J, Darzynkiewicz E, Nowotny M, Bujnicki JM Nat Commun. 2014 RNA Bricks - a database of RNA 3D motifs and their interactions Chojnowski G, Walen T, Bujnicki JM Nucleic Acids Res.. 2014 Solution conformation of Adenovirus Virus Associated RNA-I and its interaction with PKR Dzananovic E, Patel TR, Chojnowski G, Boniecki MJ, Deo S, McEleney K, Harding SE, Bujnicki JM, McKenna SA J Struct Biol. 2014 Novel Highly Thermostable Endolysin from Thermus scotoductus MAT2119 Bacteriophage Ph2119 with Amino Acid Sequence Similarity to Eukaryotic Peptidoglycan Recognition Proteins Plotka M, Kaczorowska AK, Stefanska A, Morzywolek A, Fridjonsson OH, Dunin-Horkawicz S, Kozlowski L, Hreggvidsson GO, Kristjansson JK, Dabrowski S, Bujnicki JM, Kaczorowski T Appl Environ Microbiol. 2014 Computational modeling of protein-RNA complex structures Tuszynska I, Matelska D, Magnus M, Chojnowski G, Kasprzak JM, Kozlowski LP, Dunin-Horkawicz S, Bujnicki JM Methods. 2014 Rational design of helical nanotubes from self-assembly of coiled-coil lock washers Xu C, Liu R, Mehta AK, Guerrero-Ferreira RC, Wright ER, Dunin-Horkawicz S, Morris K, Serpell LC, Zuo X, Wall JS, Conticello VP J Am Chem Soc.. 2013 LigandRNA: computational predictor of RNA-ligand interactions Philips A, Milanowska K, Lach G, Bujnicki JM RNA. 2013 Caveolin-1 - a novel interacting partner of organic cation/carnitine transporter (octn2): effect of protein kinase C on this interaction in rat astrocytes. Czeredys M, Samluk L, Michalec K, Tułodziecka K, Skowronek K, Nałęcz KA PLoS One. 2013 S6:S18 ribosomal protein complex interacts with a structural motif present in its own mRNA Matelska D, Purta E, Panek S, Boniecki MJ, Bujnicki JM, Dunin-Horkawicz S RNA. 2013 A linear time algorithm for consecutive permutation pattern matching Kubica M, Kulczyńskia T, Radoszewskia J, Rytter W,Walen T Information Processing Letters. 2013 Putative Structural and Functional Coupling of the Mitochondrial BKCa Channel to the Respiratory Chain Bednarczyk P, Wieckowski MR, Broszkiewicz M, Skowronek K, Siemen D, Szewczyk A PLoS One. 2013 A note on efficient computation of all Abelian periods in a string Crochemore M, Iliopoulos C.S, Kociumaka T, Kubica M, Pachocki J, Radoszewski J, Rytter W,Tyczyński W, Waleń T Information Processing Letters. 2013 QA-RecombineIt: a server for quality assessment and recombination of protein models Pawlowski M, Bogdanowicz A, Bujnicki JM Nucleic Acids Res. 2013 RNAlyzer--novel approach for quality analysis of RNA structural models Lukasiak P, Antczak M, Ratajczak T, Bujnicki JM, Szachniuk M, Adamiak RW, Popenda M, Blazewicz J Nucleic Acids Res. 2013 Bioinformatics and computational biology in Poland Bujnicki JM, Tiuryn J PLoS Comput Biol. 2013 CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction Puton T, Kozlowski LP, Rother KM, Bujnicki JM Nucleic Acids Res.. 2013 Structural analysis of monomeric retroviral reverse transcriptase in complex with an RNA/DNA hybrid Nowak E, Potrzebowski W, Konarev PV, Rausch JW, Bona MK, Svergun DI, Bujnicki JM, Le Grice SF, Nowotny M Nucleic Acids Res. 2013 RNApathwaysDB – a database of RNA maturation and decay pathways Milanowska K, Mikolajczak K, Lukasik A, Skorupski M, Balcer Z, Machnicka MA, Nowacka M, Rother KM, Bujnicki JM Nucleic Acids Res. 2013 MODOMICS: a database of RNA modification pathways: 2013 update Machnicka MA, Milanowska K, Osman Oglou O, Purta E, Kurkowska M, Olchowik A, Januszewski W, Kalinowski S, Dunin-Horkawicz S, Rother KM, Helm M, Bujnicki JM, Grosjean H Nucleic Acids Res. 2013