Structure prediction of alternatively spliced proteins In „Alternative pre-mRNA Splicing: Theory and Protocols: The Complete Guide for Biomedical Scientists” Kozlowski L, Orlowski J, Bujnicki JM 2012 Publication Template-based and template-free modeling of RNA 3D structure: inspirations from protein structure modeling. Rother K, Rother M, Boniecki M, Puton T, Tomala K, Lukasz P, Bujnicki JM. RNA 3D Structure Analysis and Prediction. 2012 MetaDisorder: A meta-server for the prediction of intrinsic disorder in proteins Kozlowski LP, Bujnicki JM BMC Bioinformatics. 2012 Molecular evolution of dihydrouridine synthases Kasprzak JM, Czerwoniec A, Bujnicki JM BMC Bioinformatics. 2012 Intrinsic disorder in the human spliceosomal proteome Korneta I, Bujnicki JM PLoS Comput Biol. 2012 Increased acetylation of lysine 317/320 of p53 caused by BCR-ABL protects from cytoplasmic translocation of p53 and mitochondria-dependent apoptosis in response to DNA damage Kusio-Kobialka M, Wolanin K, Podszywalow-Bartnicka P, Sikora E, Skowronek K, McKenna SL, Ghizzoni M, Dekker FJ, Piwocka K Apoptosis. 2012 A novel insight into the oxidoreductase activity of Helicobacter pylori HP0231 protein Roszczenko P, Radomska KA, Wywial E, Collet JF, Jagusztyn-Krynicka EK PLoS One. 2012 A novel homozygous p.Arg527Leu LMNA mutation in two unrelated egyptian families causes overlapping mandibuloacral dysplasia and progeria syndrome Al-Haggar M, Madej-Pilarczyk A, Kozlowski L, Bujnicki JM, Yahia S, Abdel-Hadi D, Shams A, Ahmad N, Hamed S, Puzianowska-Kuznicka M Eur J Hum Genet. 2012 MetaLocGramN: A meta-predictor of protein subcellular localization for Gram-negative bacteria Magnus M, Pawlowski M, Bujnicki JM Biochim Biophys Acta. 2012 Rational engineering of sequence specificity in R.MwoI restriction endonuclease Skowronek K, Boniecki MJ, Kluge B, Bujnicki JM Nucleic Acids Res. 2012 Delineation of structural domains and identification of functionally important residues in DNA repair enzyme Exonuclease VII Poleszak K, Kaminska KH, Dunin-Horkawicz S, Lupas A, Skowronek KJ, Bujnicki JM Nucleic Acids Res. 2012 Structural bioinformatics of the human spliceosomal proteome Korneta I, Magnus M, Bujnicki JM Nucleic Acids Res. 2012 Novel non-specific DNA adenine methyltransferases Drozdz M, Piekarowicz A, Bujnicki JM, Radlinska M Nucleic Acids Res. 2012 Sequence-specific cleavage of the RNA strand in DNA-RNA hybrids by the fusion of ribonuclease H with a zinc finger Sulej AA, Tuszynska I, Skowronek KJ, Nowotny M, Bujnicki JM Nucleic Acids Res. 2012 The utility of comparative models and the local model quality for protein crystal structure determination by Molecular Replacement Pawlowski M, Bujnicki JM BMC Bioinformatics. 2012 RNAmap2D -- calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures Pietal MJ, Szostak N, Rother KM, Bujnicki JM BMC Bioinformatics. 2012 Crystal structure and mechanism of action of the N6-methyladenine dependent type IIM restriction endonuclease Siwek W, Czapinska H, Bochtler M, Bujnicki JM, Skowronek K Nucleic Acids Res. 2012 Protein kinase C regulates amino acid transporter ATB Samluk L, Czeredys M, Skowronek K, Nałęcz KA Biochem Biophys Res Commun.. 2012 Statins Impair Glucose Uptake in Tumor Cells Malenda A, Skrobanska A, Issat T, Winiarska M, Bil J, Oleszczak B, Sinski M, Firczuk M, Bujnicki JM, Chlebowska J, Staruch AD, Glodkowska-Mrowka E, Kunikowska J, Krolicki L, Szablewski L, Gaciong Z, Koziak K, Jakobisiak M, Golab J, Nowis DA Neoplasia. 2012 Einstein–Hopf drag, Doppler shift of thermal radiation and blackbody drag: Three perspectives on quantum friction Lach G, DeKievet M, Jentschura UD Cent. Eur. J. Phys.. 2012 Crystal structures of the tRNA:m(2)G6 methyltransferase Trm14/TrmN from two domains of life Fislage M, Roovers M, Tuszynska I, Bujnicki JM, Droogmans L, Versées W Nucleic Acids Res. 2012 RNA-Puzzles: A CASP-like evaluation of RNA three-dimensional structure prediction Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, Patel DJ, Philips A, Puton T, Santalucia J, Sijenyi F, Hermann T, Rother K, Rother M, Serganov A, Skorupski M, Soltysinski T, Sripakdeevong P, Tuszynska I, Weeks KM, Waldsich C, Wildauer M, Leontis NB, Westhof E RNA. 2012 RIBER/DIBER: a software suite for crystal content analysis in the studies of protein-nucleic acid complexes Chojnowski G, Bujnicki JM, Bochtler M Bioinformatics. 2012 Related bifunctional restriction endonuclease-methyltransferase triplets: TspDTI, Tth111II/TthHB27I and TsoI with distinct specificities Zylicz-Stachula A, Zolnierkiewicz O, Lubys A, Ramanauskaite D, Mitkaite G, Bujnicki JM, Skowron P BMC Mol Biol. 2012 The open reading frame TTC1157 of Thermus thermophilus HB27 encodes the methyltransferase forming N2-methylguanosine at position 6 in tRNA Roovers M, Oudjama Y, Fislage M, Bujnicki JM, Versées W, Droogmans L RNA. 2012 Crohn's Disease Risk Alleles on the NOD2 Locus Have Been Maintained by Natural Selection on Standing Variation Nakagome S, Mano S, Kozlowski L, Bujnicki JM, Shibata H, Fukumaki Y, Kidd JR, Kidd KK, Kawamura S, Oota H Mol Biol Evol. 2012 Computational methods for prediction of protein-RNA interactions Puton T, Kozlowski L, Tuszynska I, Rother K, Bujnicki JM J Struct Biol. 2012 A toolbox for developing bioinformatics software Rother K, Potrzebowski W, Puton T, Rother M, Wywial E, Bujnicki JM Brief Bioinform. 2012 Structure and operation of the DNA-translocating type I DNA restriction enzymes Kennaway CK, Taylor JE, Song CF, Potrzebowski W, Nicholson W, White JH, Swiderska A,Obarska-Kosinska A, Callow P, Cooper LP, Roberts GA, Artero JB,Bujnicki JM, Trinick J, Kneale GG, Dryden DT Genes Dev. 2012 MetalionRNA: computational predictor of metal-binding sites in RNA structures Philips A, Milanowska K, Lach G, Boniecki M, Rother K, Bujnicki JM Bioinformatics. 2012