Crystal structure of a fructokinase homolog from Halothermothrix orenii Chua TK, Seetharaman J, Kasprzak JM, Ng C, Patel BK, Love C, Bujnicki JM, Sivaraman J J Struct Biol. 2010 FILTREST3D: discrimination of structural models using restraints from experimental data. Gajda MJ, Tuszynska I, Kaczor M, Bakulina AY, Bujnicki JM Bioinformatics. 2010 Modeling of Escherichia coli Endonuclease V structure in complex with DNA. Majorek KA, Bujnicki JM J Mol Model. 2009 The mitotic kinesin-14 Ncd drives directional microtubule-microtubule sliding. Fink G, Hajdo L, Skowronek KJ, Reuther C, Kasprzak AA, Diez S Nat Cell Biol. 2009 MODOMICS: a database of RNA modification pathways. 2008 update Czerwoniec A, Dunin-Horkawicz S, Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Grosjean H, Rother K Nucleic Acids Res. 2009 Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymes. Nakonieczna J, Kaczorowski T, Obarska-Kosinska A, Bujnicki JM Appl Environ Microbiol. 2009 The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein Kennaway CK, Obarska-Kosinska A, White JH, Tuszynska I, Cooper LP, Bujnicki JM, Trinick J, Dryden DT Nucleic Acids Res. 2009 Conformation of a plasmid replication initiator protein affects its proteolysis by ClpXP system Pierechod M, Nowak A, Saari A, Purta E, Bujnicki JM, Konieczny I Protein Sci. 2009 Medaka: a promising model animal for comparative population genomics. Matsumoto Y, Oota H, Asaoka Y, Nishina H, Watanabe K, Bujnicki JM, Oda S, Kawamura S, Mitani H BMC Res Notes. 2009 Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors Bauer RA, Rother K, Moor P, Reinert K, Steinke T, Bujnicki JM Algorithms. 2009 YgdE is the 2'-O-ribose methyltransferase RlmM specific for nucleotide C2498 in bacterial 23S rRNA. Purta E, O'Connor M, Bujnicki JM, Douthwaite S Mol Microbiol. 2009 AAN82231 protein from uropathogenic E. coli CFT073 is a close paralog of DsbB enzymes and does not belong to the DsbI family Pawłowski M, Lasica AM, Jagusztyn-Krynicka EK, Bujnicki JM Pol J Microbiol. 2009 Cloning and analysis of a bifunctional methyltransferase/restriction endonuclease TspGWI, the prototype of a Thermus sp. enzyme family. Zylicz-Stachula A, Bujnicki JM, Skowron PM BMC Mol Biol. 2009 SMN-assisted assembly of snRNP-specific Sm cores in trypanosomes. Palfi Z, Jaé N, Preusser C, Kaminska KH, Bujnicki JM, Lee JH, Günzl A, Kambach C, Urlaub H, Bindereif A Genes Dev. 2009 Common design principles in the spliceosomal RNA helicase Brr2 and in the Hel308 DNA helicase. Pena V, Jovin SM, Fabrizio P, Orlowski J, Bujnicki JM, Lührmann R, Wahl MC Mol Cell. 2009 Integrating ELF4 into the circadian system through combined structural and functional studies. Kolmos E, Nowak M, Werner M, Fischer K, Schwarz G, Mathews S, Schoof H, Nagy F, Bujnicki JM, Davis SJ HFSP J. 2009 Identification and classification of bcl genes and proteins of Bacillus cereus group organisms and their application in Bacillus anthracis detection and fingerprinting. Leski TA, Caswell CC, Pawlowski M, Klinke DJ, Bujnicki JM, Hart SJ, Lukomski S Appl Environ Microbiol. 2009 Modeling and experimental analyses reveal a two-domain structure and amino acids important for the activity of aminoglycoside resistance methyltransferase Sgm. Maravić Vlahovicek G, Cubrilo S, Tkaczuk KL, Bujnicki JM Biochim Biophys Acta. 2008 Structural integrity of the beta beta alpha-Metal finger motif is required for DNA binding and stable protein-DNA complex formation in R.KpnI. Vasu K, Saravanan M, Bujnicki JM, Nagaraja V Biochim Biophys Acta. 2008 Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms(2)io(6)A37 in tRNA. Kaminska KH, Baraniak U, Boniecki M, Nowaczyk K, Czerwoniec A, Bujnicki JM Proteins. 2008 Sequence-structure-function analysis of the bifunctional enzyme MnmC that catalyses the last two steps in the biosynthesis of hypermodified nucleoside mnm5s2U in tRNA. Roovers M, Oudjama Y, Kaminska KH, Purta E, Caillet J, Droogmans L, Bujnicki JM Proteins. 2008 Bacteriophage Mu Mom protein responsible for DNA modification is a new member of the acyltransferase superfamily. Kaminska KH, Bujnicki JM Cell Cycle. 2008 The TbMTr1 spliced leader RNA cap 1 2'-O-ribose methyltransferase from Trypanosoma brucei acts with substrate specificity Mittra B, Zamudio JR, Bujnicki JM, Stepinski J, Darzynkiewicz E, Campbell DA, Sturm NR J Biol Chem. 2008 Virtual screening and experimental verification to identify potential inhibitors of the ErmC methyltransferase responsible for bacterial resistance against macrolide antibiotics. Feder M, Purta E, Koscinski L, Cubrilo S, Maravic Vlahovicek G, Bujnicki JM ChemMedChem. 2008 Is AID a monomer in solution? Bhagwat AS, Carpenter MA, Bujnicki JM DNA Repair (Amst). 2008 EXOG, a novel paralog of Endonuclease G in higher eukaryotes. Cymerman IA, Chung I, Beckmann BM, Bujnicki JM, Meiss G Nucleic Acids Res. 2008 Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA. Sen TZ, Kloster M, Jernigan RL, Kolinski A, Bujnicki JM, Kloczkowski A Biophys J. 2008 The structure of sucrose phosphate synthase from Halothermothrix orenii reveals its mechanism of action and binding mode. Chua TK, Bujnicki JM, Tan TC, Huynh F, Patel BK, Sivaraman J Plant Cell. 2008 The YqfN protein of Bacillus subtilis is the tRNA: m1A22 methyltransferase (TrmK). Roovers M, Kaminska KH, Tkaczuk KL, Gigot D, Droogmans L, Bujnicki JM Nucleic Acids Res. 2008 Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses. Orlowski J, Bujnicki JM Nucleic Acids Res. 2008