2016

Isolation of Plant Photosystem II Complexes by Fractional Solubilization Haniewicz P, Floris D, Farci D, Kirkpatrick J, Loi MC, Büchel C, Bochtler M, Piano D Front Plant Sci. 2016 Chatty Mitochondria: Keeping Balance in Cellular Protein Homeostasis Topf U, Wrobel L, Chacinska A Trends Cell Biol. 2016 TLR-6 SNP P249S is associated with healthy aging in nonsmoking Eastern European Caucasians - A cohort study Hamann L, Bustami J, Iakoubov L, Szwed M, Mossakowska M, Schumann RR, Puzianowska-Kuznicka M Immun Ageing. 2016 Kinesin-Binding Protein Controls Microtubule Dynamics and Cargo Trafficking by Regulating Kinesin Motor Activity Kevenaar JT, Bianchi S, van Spronsen M, Olieric N, Lipka J,Frias CP, Mikhaylova M, Harterink M, Keijzer N, Wulf PS, Hilbert M, Kapitein LC, de Graaff E, Ahkmanova A, Steinmetz MO, Hoogenraad CC Curr Biol. 2016 APPL proteins promote TGFβ-induced nuclear transport of the TGFβ type I receptor intracellular domain Song J, Mu Y, Li C, Bergh A, Miaczynska M, Heldin CH, Landström M Oncotarget. 2016 ESCRT proteins restrict constitutive NF-κB signaling by trafficking cytokine receptors Mamińska A, Bartosik A, Banach-Orłowska M, Pilecka I, Jastrzębski K, Zdżalik-Bielecka D, Castanon I, Poulain M, Neyen C, Wolińska-Nizioł L, Toruń A, Szymańska E, Kowalczyk A, Piwocka K, Simonsen A, Stenmark H, Fürthauer M, González-Gaitán M, Miaczynska M Sci Signal. 2016 DANIO-CODE: Toward an Encyclopedia of DNA Elements in Zebrafish Tan H, Onichtchouk D, Winata C Zebrafish. 2016 Structure and mechanism of nucleases regulated by SLX4 Nowotny M, Gaur V Curr Opin Struct Biol. 2016 Physical activity, body composition and general health status of physically active students of the University of the Third Age (U3A) Zajac-Gawlak I, Pospiech D, Kroemeke A, Mossakowska M, Gába A, Pelclová J, Pridalová M, Kłapcinska B Archives of Gerontology and Geriatrics. 2016 Microtubule-binding protein doublecortin-like kinase 1 (DCLK1) guides kinesin-3-mediated cargo transport to dendrites Lipka J, Kapitein LC, Jaworski J, Hoogenraad CC EMBO J. 2016 Dextran Nanoparticle Synthesis and Properties Wasiak I, Kulikowska A, Janczewska M, Michalak M, Cymerman IA, Nagalski A, Kallinger P, Szymanski WW, Ciach T PLoS One. 2016 Prevalence, awareness, and control of hypertension in elderly and very elderly in Poland: results of a cross-sectional representative survey Zdrojewski T, Wizner B, Więcek A, Ślusarczyk P, Chudek J, Mossakowska M, Bandosz P, Bobak M, Kozakiewicz K, Broda G, Wyrzykowski B, Grodzicki T J Hypertens. 2016 Impaired dynamin 2 function leads to increased AP-1 transcriptional activity through the JNK/c-Jun pathway Szymanska E, Skowronek A, Miaczynska M Cell Signal. 2016 Molecular anatomy of the thalamic complex and the underlying transcription factors Nagalski A, Puelles L, Dabrowski M, Wegierski T, Kuznicki J, Wisniewska MB Brain Struct Funct. 2016

2015

Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes. Machnicka AM, Kaminska KH, Dunin-Horkawicz S, Bujnicki JM. BMC Bioinformatics. 2015 Molecular mechanisms of induced pluripotency. Kulcenty K, Wróblewska J, Mazurek S, Liszewska E, Jaworski J. Contemp Oncol (Pozn). 2015 NeuroMorph: A Toolset for the Morphometric Analysis and Visualization of 3D Models Derived from Electron Microscopy Image Stacks. Jorstad A, Nigro B, Cali C, Wawrzyniak M, Fua P, Knott G. Neuroinformatics. 2015 Research reforms: Ukrainian science needs elixir of youth. Vassetzky Y, Gout I, Kuznicki J. Nature. 2015 RNAcentral: a comprehensive database of non-coding RNA sequences The RNAcentral Consortium (Petrov AI et al within Bujnicki JM) Nucleic Acids Res. 2015 Functional and evolutionary analyses of Helicobacter pylori HP0231 (DsbK) protein with strong oxidative and chaperone activity characterized by a highly diverged dimerization domain Bocian-Ostrzycka KM, Łasica AM, Dunin-Horkawicz S, Grzeszczuk MJ, Drabik K, Dobosz AM, Godlewska R, Nowak E, Collet J-F, Jagusztyn-Krynicka EK Frontiers in Microbiology. 2015 APPL endosomes are not obligatory endocytic intermediates but act as stable cargo-sorting compartments Kalaidzidis I, Miaczynska M, Brewińska-Olchowik M, Hupalowska A, Ferguson C, Parton RG, Kalaidzidis Y, Zerial M J Cell Biol. 2015 Magnesium binding architectures in RNA crystal structures: validation binding preferences, classification, and motif detection Zheng H, Shabalin I, Handing K, Bujnicki JM, Minor M Nucleic Acids Res. 2015 NPDock – a web server for protein-nucleic acid docking Tuszynska I, Magnus M, Jonak K, Dawson W, Bujnicki JM Nucleic Acids Res. 2015 Biochemical Characterization and Validation of a Catalytic Site of a Highly Thermostable Ts2631 Endolysin from the Thermus scotoductus Phage vB_Tsc2631 Plotka M, Kaczorowska AK, Morzywolek A, Makowska J, Kozlowski LP, Thorisdottir A, Skírnisdottir S, Hjörleifsdottir S, Fridjonsson OH, Hreggvidsson GO, Kristjansson JK, Dabrowski S, Bujnicki JM, Kaczorowski T PLoS One. 2015 Computational methods for prediction of RNA interactions with metal ions and small organic ligands Philips A, Lach G, Bujnicki JM Methods Enzymol. 2015 RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Miao Z, Adamiak RW, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cheng C, Chojnowski G, Chou FC, Cordero P, Cruz JA, Ferré-D'amaré AR, Das R, Ding F, Dokholyan NV, Dunin-Horkawicz S, Kladwang W, Krokhotin A, Lach G, Magnus M, Major F, Mann TH, Masquida B, Matelska D, Meyer M, Peselis A, Popenda M, Purzycka KJ, Serganov A, Stasiewicz J, Szachniuk M, Tandon A, Tian S, Wang J, Xiao Y, Xu X, Zhang J, Zhao P, Zok T, Westhof E RNA. 2015 A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing Liu S, Mozaffari-Jovin S, Wollenhaupt J, Santos KF, Theuser M, Dunin-Horkawicz S, Fabrizio P, Bujnicki JM, Lührmann R, Wahl MC eLife. 2015 Sequence-specific cleavage of dsRNA by Mini-III RNase Glow D, Pianka D, Sulej A, Kozlowski L, Czarnecka J, Chojnowski G, Skowronek KJ, Bujnicki JM Nucleic Acids Res. 2015 Characterization of the termini of the West Nile virus genome and their interactions with the small isoform of the 2' 5'-Oligoadenylate Synthetase family Deo S, Patel TR, Chojnowski G, Koul A, Dzananovic E, McEleney K, Bujnicki JM, McKenna SA J Struct Biol. 2015 Structure and intrinsic disorder of the proteins of the Trypanosoma brucei editosome Czerwoniec A, Kasprzak JM, Bytner P, Dobrychlop M, Bujnicki JM FEBS Lett. 2015