Functional interactions of HslV (ClpQ) with the ATPase HslU (ClpY) Ramachandran R, Hartmann C, Song HK, Huber R, Bochtler M Proc Natl Acad Sci U S A. 2002 Angiogenesis inhibitors specific for methionine aminopeptidase 2 as drugs for malaria and leishmaniasis Zhang P, Nicholson DE, Bujnicki JM, Su X, Brendle JJ, Ferdig M, Kyle DE, Milhous WK, Chiang PK J Biomed Sci. 2002 Streptococcal Scl1 and Scl2 proteins form collagen-like triple helices. Xu Y, Keene DR, Bujnicki JM, Höök M, Lukomski S J Biol Chem. 2002 Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop Pintard L, Lecointe F, Bujnicki JM, Bonnerot C, Grosjean H, Lapeyre B EMBO J. 2002 MRM2 encodes a novel yeast mitochondrial 21S rRNA methyltransferase Pintard L, Bujnicki JM, Lapeyre B, Bonnerot C EMBO J. 2002 Evolutionary relationship between different subgroups of restriction endonucleases. Pingoud V, Kubareva E, Stengel G, Friedhoff P, Bujnicki JM, Urbanke C, Sudina A, Pingoud A J Biol Chem. 2002 The hppA gene of Helicobacter pylori encodes the class C acid phosphatase precursor Godlewska R, Bujnicki JM, Ostrowski J, Jagusztyn-Krynicka EK FEBS Lett. 2002 Fold-recognition detects an error in the Protein Data Bank Bujnicki J, Rychlewski L, Fischer D Bioinformatics. 2002 In silico identification, structure prediction and phylogenetic analysis of the 2'-O-ribose (cap 1) methyltransferase domain in the large structural protein of ssRNA negative-strand viruses Bujnicki JM, Rychlewski L Protein Eng. 2002 RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited--bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure Bujnicki JM, Rychlewski L BMC Bioinformatics. 2002 Fold-recognition analysis predicts that the Tag protein family shares a common domain with the helix-hairpin-helix DNA glycosylases Bujnicki JM, Rychlewski L DNA Repair (Amst). 2002 Bioinformatic analyses of the tRNA: (guanine 26, N2,N2)-dimethyltransferase (Trm1) family Bujnicki JM, Leach RA, Debski J, Rychlewski L J Mol Microbiol Biotechnol. 2002 Errors in the D. radiodurans large ribosomal subunit structure detected by protein fold-recognition and structure validation tools Bujnicki JM, Feder M, Rychlewski L, Fischer D FEBS Lett. 2002 Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA:m(6)A methyltransferase Bujnicki JM, Feder M, Radlinska M, Blumenthal RM J Mol Evol. 2002 Sequence analysis and structure prediction of 23S rRNA:m1G methyltransferases reveals a conserved core augmented with a putative Zn-binding domain in the N-terminus and family-specific elaborations in the C-terminus Bujnicki JM, Blumenthal RM, Rychlewski L J Mol Microbiol Biotechnol. 2002 Sequence permutations in the molecular evolution of DNA methyltransferases Bujnicki JM BMC Evol Biol. 2002 AP2-like cis element is required for calretinin gene promoter activity in cells of neuronal phenotype differentiated from multipotent human cell line DEV. Billing-Marczak K, Buzanska L, Winsky L, Nowotny M, Rudka T, Isaacs K, Belin MF, Kuznicki J. Biochim Biophys Acta. 2002 Plasma creatine and sodium abnormalities in Polish centenarians Wieczorowska-Tobis K, Mossakowska M, Niemir Z, Breborowicz A, Oreopoulos DG Ann Acad Med Gedan. 2001 Structural and biochemical characterization of neuronal calretinin domain I-II (residues 1-100). Comparison to homologous calbindin D28k domain I-II (residues 1-93) Palczewska M, Groves P, Ambrus A, Kaleta A, Kövér KE, Batta G, Kuźnicki J. Eur J Biochem.. 2001 Site-directed mutagenesis defines the catalytic aspartate in the active site of the atypical DNA: m4C methyltransferase M.NgoMXV Radlinska M, Bujnicki JM Acta Microbiol Pol. 2001 Cloning of enterohemorrhagic Escherichia coli phage VT-2 dam methyltransferase Radlinska M, Bujnicki JM Acta Microbiol Pol. 2001 Pcons: a neural-network-based consensus predictor that improves fold recognition Lundström J, Rychlewski L, Bujnicki J, Elofsson A Protein Sci. 2001 The herpesvirus alkaline exonuclease belongs to the restriction endonuclease PD-(D/E)XK superfamily: insight from molecular modeling and phylogenetic analysis. Bujnicki JM, Rychlewski L Virus Genes. 2001 Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles. Bujnicki JM, Rychlewski L J Mol Microbiol Biotechnol. 2001 Reassignment of specificities of two cap methyltransferase domains in the reovirus lambda 2 protein Bujnicki JM, Rychlewski L Genome Biol. 2001 Unusual evolutionary history of the tRNA splicing endonuclease EndA: relationship to the LAGLIDADG and PD-(D/E)XK deoxyribonucleases. Bujnicki JM, Rychlewski L Protein Sci. 2001 Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs Bujnicki JM, Rychlewski L Gene. 2001 Sequence analysis and structure prediction of aminoglycoside-resistance 16S rRNA:m7G methyltransferases Bujnicki JM, Rychlewski L Acta Microbiol Pol. 2001 Three-dimensional modeling of the I-TevI homing endonuclease catalytic domain, a GIY-YIG superfamily member, using NMR restraints and Monte Carlo dynamics. Bujnicki JM, Rotkiewicz P, Kolinski A, Rychlewski L Protein Eng. 2001 Cloning of the Haemophilus influenzae Dam methyltransferase and analysis of its relationship to the Dam methyltransferase encoded by the HP1 phage Bujnicki JM, Radlinska M, Zaleski P, Piekarowicz A Acta Biochim Pol. 2001