Peptydoglycan amidase MepA is a LAS metallopeptidase Marcyjaniak M, Odintsov SG, Sabala I, Bochtler M J Biol Chem. 2005 Cloning and preliminary characterization of a GATC-specific beta2-class DNA:m6A methyltransferase encoded by transposon Tn1549 from Enterococcus spp. Radlińska M, Piekarowicz A, Galimand M, Bujnicki JM Pol J Microbiol. 2005 Analysis of the quaternary structure of the MutL C-terminal domain. Kosinski J, Steindorf I, Bujnicki JM, Giron-Monzon L, Friedhoff P J Mol Biol. 2005 FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6. Kosinski J, Gajda MJ, Cymerman IA, Kurowski MA, Pawlowski M, Boniecki M, Obarska A, Papaj G, Sroczynska-Obuchowicz P, Tkaczuk KL, Sniezynska P, Sasin JM, Augustyn A, Bujnicki JM, Feder M Proteins. 2005 Molecular modeling of a psychrophilic β-galactosidase Tkaczuk KL, Bujnicki JM, Bialkowska A, Bielecki S, Turkiewicz M, Cieslinski H, Kur J Biocatal Biotransform. 2005 Publication Identification of amino acids important for target recognition by the DNA:m5C methyltransferase M.NgoPII by alanine-scanning mutagenesis of residues at the protein-DNA interface. Radlinska M, Kondrzycka-Dada A, Piekarowicz A, Bujnicki JM. Proteins. 2005 Publication Characterization of new DsbB-like thiol-oxidoreductases of Campylobacter jejuni and Helicobacter pylori and classification of the DsbB family based on phylogenomic, structural and functional criteria. Raczko AM, Bujnicki JM, Pawlowski M, Godlewska R, Lewandowska M, Jagusztyn-Krynicka EK Microbiology. 2005 Sequence-structure-function relationships of a tRNA (m7G46) methyltransferase studied by homology modeling and site-directed mutagenesis. Purta E, van Vliet F, Tricot C, De Bie LG, Feder M, Skowronek K, Droogmans L, Bujnicki JM Proteins. 2005 Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA. Purushothaman SK, Bujnicki JM, Grosjean H, Lapeyre B. Mol Cell Biol. 2005 Specificity changes in the evolution of type II restriction endonucleases: a biochemical and bioinformatic analysis of restriction enzymes that recognize unrelated sequences Pingoud V, Sudina A, Geyer H, Bujnicki JM, Lurz R, Lüder G, Morgan R, Kubareva E, Pingoud A J Biol Chem. 2005 Identification of base-specific contacts in protein-DNA complexes by photocrosslinking and mass spectrometry: a case study using the restriction endonuclease SsoII Pingoud V, Geyer H, Geyer R, Kubareva E, Bujnicki JM, Pingoud A Mol Biosyst. 2005 Inference of relationships in the 'twilight zone' of homology using a combination of bioinformatics and site-directed mutagenesis: a case study of restriction endonucleases Bsp6I and PvuII Pawlak SD, Radlinska M, Chmiel AA, Bujnicki JM, Skowronek KJ Nucleic Acids Res. 2005 Analysis of the quaternary structure of the MutL C-terminal domain. Kosinski J, Steindorf I, Bujnicki JM, Giron-Monzon L, Friedhoff P J Mol Biol. 2005 The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function. Kosinski J, Feder M, Bujnicki JM BMC Bioinformatics. 2005 Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models. Koliński A, Bujnicki JM Proteins. 2005 Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi Ishikawa K, Watanabe M, Kuroita T, Uchiyama I, Bujnicki JM, Kawakami B, Tanokura M, Kobayashi I Nucleic Acids Res. 2005 Identification of a new family of putative PD-(D/E)XK nucleases with unusual phylogenomic distribution and a new type of the active site. Feder M, Bujnicki JM BMC Genomics. 2005 DNase II is a member of the phospholipase D superfamily. Cymerman IA, Meiss G, Bujnicki JM Bioinformatics. 2005 A theoretical model of restriction endonuclease NlaIV in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis and circular dichroism spectroscopy. Chmiel AA, Radlinska M, Pawlak SD, Krowarsch D, Bujnicki JM, Skowronek KJ Protein Eng Des Sel. 2005 A homology model of restriction endonuclease SfiI in complex with DNA Chmiel AA, Bujnicki JM, Skowronek KJ BMC Struct Biol. 2005 Przewidywanie struktury bialek: Boltzmann i Darwin Bujnicki J.M. Kosmos. 2005 Mva1269I: a monomeric type IIS restriction endonuclease from Micrococcus varians with two EcoRI- and FokI-like catalytic domains. Armalyte E, Bujnicki JM, Giedriene J, Gasiunas G, Kosiński J, Lubys A J Biol Chem. 2005 Mutational analysis of BTAF1-TBP interaction: BTAF1 can rescue DNA-binding defective TBP mutants. Klejman MP, Zhao X, van Schaik FM, Herr W, Timmers HT Nucleic Acids Res. 2005 Psc3 cohesin of Schizosaccharomyces pombe: cell cycle analysis and identification of three distinct isoforms. Ilyushik E, Pryce DW, Walerych D, Riddell T, Wakeman JA, McInerny CJ, McFarlane RJ Biol Chem. 2005 Characterization of testis-specific serine-threonine kinase 3 and its activation by phosphoinositide-dependent kinase-1-dependent signalling. Bucko-Justyna M, Lipinski L, Burgering BM, Trzeciak L FEBS J. 2005 Primary ciliary dyskinesia: genes, candidate genes and chromosomal regions Geremek M, Witt M J Appl Genet. 2004 Apparent X-linked primary ciliary dyskinesia associated with retinitis pigmentosa and a hearing loss Krawczyński MR, Dmeńska H, Witt M J Appl Genet. 2004 PCD and RP: X-linked inheritance of both disorders? Krawczyński MR, Witt M Pediatr Pulmonol. 2004 Mikrojądra w komórkach człowieka - powstawanie, zawartość oraz wykorzystanie diagnostyczne i prognostyczne Lubka M, Wojda A, Witt M Postępy Biol Kom. 2004 Kidney function estimated with different formulas in centenarians Wieczorowska-Tobis K, Niemir ZI, Guzik P, Mossakowska M Rocz Akad Med Bialymst. 2004