Thermodynamic studies of interactions of calf spleen PNP with acyclic phosphonate inhibitors Breer K, Wielgus-Kutrowska B, Hashimoto M, Hikishima S, Yokomatsu T, Szczepanowski RH, Bochtler M, Girstun A, Starón K, Bzowska A Nucleic Acids Symp Ser (Oxf). 2008 The recognition domain of the BpuJI restriction endonuclease in complex with cognate DNA at 1.3-A resolution Sukackaite R, Grazulis S, Bochtler M, Siksnys V. J Mol Biol. 2008 Crystal structure and mechanism of the Staphylococcus cohnii virginiamycin B lyase (Vgb) Lipka M, Filipek R, Bochtler M Biochemistry. 2008 Modeling and experimental analyses reveal a two-domain structure and amino acids important for the activity of aminoglycoside resistance methyltransferase Sgm. Maravić Vlahovicek G, Cubrilo S, Tkaczuk KL, Bujnicki JM Biochim Biophys Acta. 2008 Structural integrity of the beta beta alpha-Metal finger motif is required for DNA binding and stable protein-DNA complex formation in R.KpnI. Vasu K, Saravanan M, Bujnicki JM, Nagaraja V Biochim Biophys Acta. 2008 Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms(2)io(6)A37 in tRNA. Kaminska KH, Baraniak U, Boniecki M, Nowaczyk K, Czerwoniec A, Bujnicki JM Proteins. 2008 Sequence-structure-function analysis of the bifunctional enzyme MnmC that catalyses the last two steps in the biosynthesis of hypermodified nucleoside mnm5s2U in tRNA. Roovers M, Oudjama Y, Kaminska KH, Purta E, Caillet J, Droogmans L, Bujnicki JM Proteins. 2008 Bacteriophage Mu Mom protein responsible for DNA modification is a new member of the acyltransferase superfamily. Kaminska KH, Bujnicki JM Cell Cycle. 2008 The TbMTr1 spliced leader RNA cap 1 2'-O-ribose methyltransferase from Trypanosoma brucei acts with substrate specificity Mittra B, Zamudio JR, Bujnicki JM, Stepinski J, Darzynkiewicz E, Campbell DA, Sturm NR J Biol Chem. 2008 Virtual screening and experimental verification to identify potential inhibitors of the ErmC methyltransferase responsible for bacterial resistance against macrolide antibiotics. Feder M, Purta E, Koscinski L, Cubrilo S, Maravic Vlahovicek G, Bujnicki JM ChemMedChem. 2008 Is AID a monomer in solution? Bhagwat AS, Carpenter MA, Bujnicki JM DNA Repair (Amst). 2008 EXOG, a novel paralog of Endonuclease G in higher eukaryotes. Cymerman IA, Chung I, Beckmann BM, Bujnicki JM, Meiss G Nucleic Acids Res. 2008 Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA. Sen TZ, Kloster M, Jernigan RL, Kolinski A, Bujnicki JM, Kloczkowski A Biophys J. 2008 The structure of sucrose phosphate synthase from Halothermothrix orenii reveals its mechanism of action and binding mode. Chua TK, Bujnicki JM, Tan TC, Huynh F, Patel BK, Sivaraman J Plant Cell. 2008 The YqfN protein of Bacillus subtilis is the tRNA: m1A22 methyltransferase (TrmK). Roovers M, Kaminska KH, Tkaczuk KL, Gigot D, Droogmans L, Bujnicki JM Nucleic Acids Res. 2008 Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses. Orlowski J, Bujnicki JM Nucleic Acids Res. 2008 Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits. White J, Li Z, Sardana R, Bujnicki JM, Marcotte EM, Johnson AW Mol Cell Biol. 2008 The PMS2 subunit of human MutLalpha contains a metal ion binding domain of the iron-dependent repressor protein family. Kosinski J, Plotz G, Guarné A, Bujnicki JM, Friedhoff P J Mol Biol. 2008 YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA. Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Douthwaite S RNA. 2008 MetaMQAP: a meta-server for the quality assessment of protein models. Pawlowski M, Gajda MJ, Matlak R, Bujnicki JM BMC Bioinformatics. 2008 Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes. Sunita S, Tkaczuk KL, Purta E, Kasprzak JM, Douthwaite S, Bujnicki JM, Sivaraman J J Mol Biol. 2008 HsdR subunit of the type I restriction-modification enzyme EcoR124I: biophysical characterisation and structural modelling. Obarska-Kosinska A, Taylor JE, Callow P, Orlowski J, Bujnicki JM, Kneale GG J Mol Biol. 2008 YccW is the m5C methyltransferase specific for 23S rRNA nucleotide 1962 Purta E, O\'Connor M, Bujnicki JM, Douthwaite S J Mol Biol. 2008 IAPs contain an evolutionarily conserved ubiquitin-binding domain that regulates NF-kappaB as well as cell survival and oncogenesis. Gyrd-Hansen M, Darding M, Miasari M, Santoro MM, Zender L, Xue W, Tenev T, da Fonseca PC, Zvelebil M, Bujnicki JM, Lowe S, Silke J, Meier P Nat Cell Biol. 2008 Mutational analysis and a structural model of methyl-directed restriction enzyme Mrr. Orlowski J, Mebrhatu MT, Michiels CW, Bujnicki JM, Aertsen A Biochem Biophys Res Commun. 2008 Fhit proteins can also recognize substrates other than dinucleoside polyphosphates. Guranowski A, Wojdyła AM, Pietrowska-Borek M, Bieganowski P, Khurs EN, Cliff MJ, Blackburn GM, Błaziak D, Stec WJ FEBS Lett. 2008 The mammalian CHORD-containing protein melusin is a stress response protein interacting with Hsp90 and Sgt1. Sbroggiò M, Ferretti R, Percivalle E, Gutkowska M, Zylicz A, Michowski W, Kuznicki J, Accornero F, Pacchioni B, Lanfranchi G, Hamm J, Turco E, Silengo L, Tarone G, Brancaccio M. FEBS Lett. 2008 ATP stimulates MDM2-mediated inhibition of the DNA-binding function of E2F1. Stevens C, Pettersson S, Wawrzynow B, Wallace M, Ball K, Zylicz A, Hupp TR FEBS J. 2008 Hsp90n - An accidental product of a fortuitous chromosomal translocation rather than a regular Hsp90 family member of human proteome Zurawska A, Urbanski J, Bieganowski P Biochim Biophys Acta. 2008 The nutritional habits among centenarians living in Warsaw Kołłajtis-Dołowy A, Pietruszka B, Kałuza J, Pawlińiska-Chmara R, Broczek K, Mossakowska M Rocz Panstw Zakl Hig. 2007