2003

The sun, the genome, the internet… eugenics? Zekanowski C Gemellological Rev. 2003 Molecular diagnostics of Alzheimer's disease (in Polish) Zekanowski C Medycyna ogólna. 2003 A novel class of cysteine protease inhibitors: solution structure of staphostatin A from Staphylococcus aureus. Dubin G, Krajewski M, Popowicz G, Stec-Niemczyk J, Bochtler M, Potempa J, Dubin A, Holak TA Biochemistry. 2003 The Staphostatin-staphopain complex: a forward binding inhibitor in complex with its target cysteine protease. Filipek R, Rzychon M, Oleksy A, Gruca M, Dubin A, Potempa J, Bochtler M J Biol Chem. 2003 Staphostatins resemble lipocalins, not cystatins in fold Rzychon M, Filipek R, Sabat A, Kosowska K, Dubin A, Potempa J, Bochtler M Protein Sci. 2003 Experimental evidence for a beta beta alpha-Me-finger nuclease motif to represent the active site of the caspase-activated DNase. Scholz SR, Korn C, Bujnicki JM, Gimadutdinow O, Pingoud A, Meiss G Biochemistry. 2003 STRUCLA: a WWW meta-server for protein structure comparison and evolutionary classification. Sasin JM, Kurowski MA, Bujnicki JM Bioinformatics. 2003 PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes Pingoud V, Conzelmann C, Kinzebach S, Sudina A, Metelev V, Kubareva E, Bujnicki JM, Lurz R, Lüder G, Xu SY, Pingoud A J Mol Biol. 2003 Sequence-structure-function relationships of Tgs1, the yeast snRNA/snoRNA cap hypermethylase Mouaikel J, Bujnicki JM, Tazi J, Bordonné R Nucleic Acids Res. 2003 Mutational analysis defines the roles of conserved amino acid residues in the predicted catalytic pocket of the rRNA:m6A methyltransferase ErmC' Maravić G, Feder M, Pongor S, Flögel M, Bujnicki JM J Mol Biol. 2003 Alanine-scanning mutagenesis of the predicted rRNA-binding domain of ErmC' redefines the substrate-binding site and suggests a model for protein-RNA interactions Maravić G, Bujnicki JM, Feder M, Pongor S, Flögel M Nucleic Acids Res. 2003 Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of S-adenosylmethionine to three crystal structures. Kurowski MA, Sasin JM, Feder M, Debski J, Bujnicki JM BMC Bioinformatics. 2003 GeneSilico protein structure prediction meta-server. Kurowski MA, Bujnicki JM Nucleic Acids Res. 2003 Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB. Kurowski MA, Bhagwat AS, Papaj G, Bujnicki JM BMC Genomics. 2003 A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation Kosinski J, Cymerman IA, Feder M, Kurowski MA, Sasin JM, Bujnicki JM Proteins. 2003 Anti-HIV-1 activity of 3-deaza-adenosine analogs. Inhibition of S-adenosylhomocysteine hydrolase and nucleotide congeners. Gordon RK, Ginalski K, Rudnicki WR, Rychlewski L, Pankaskie MC, Bujnicki JM, Chiang PK Eur J Biochem. 2003 Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2'-O-methyltransferases Feder M, Pas J, Wyrwicz LS, Bujnicki JM Gene. 2003 Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures. Droogmans L, Roovers M, Bujnicki JM, Tricot C, Hartsch T, Stalon V, Grosjean H Nucleic Acids Res. 2003 The yggH gene of Escherichia coli encodes a tRNA (m7G46) methyltransferase. De Bie LG, Roovers M, Oudjama Y, Wattiez R, Tricot C, Stalon V, Droogmans L, Bujnicki JM J Bacteriol. 2003 Structure, evolution, and inhibitor interaction of S-adenosyl-L-homocysteine hydrolase from Plasmodium falciparum. Bujnicki JM, Prigge ST, Caridha D, Chiang PK Proteins. 2003 Fold recognition, homology modeling, docking simulations, kinetics analysis and mutagenesis of ATP/CTP:tRNA nucleotidyltransferase from Methanococcus jannaschii. Bujnicki JM, Albert MA, Nelson DJ, Thurlow DL Proteins. 2003 Crystallographic and bioinformatic studies on restriction endonucleases: inference of evolutionary relationships in the "midnight zone" of homology Bujnicki JM Curr Protein Pept Sci. 2003

2002

Discrepancies in creatinine clearance in centenarians when calculated by two different mathematical formulas Wieczorowska-Tobis K, Mossakowska M, Niemir Z, Breborowicz A, Oreopoulos DG Nephrol Dial Transplant. 2002 Anemia in centenarians Wieczorowska-Tobis K, Niemir Z, Mossakowska M, Klich-Raczka A, Zyczkowska J J Am Geriatr Soc. 2002 Biochemical and physiological properties of rhodopsin regenerated with 11-cis-6-ring- and 7-ring-retinals. Kuksa V, Bartl F, Maeda T, Jang GF, Ritter E, Heck M, Van Hooser JP, Liang Y, Filipek S, Gelb MH, Hofmann KP, Palczewski K J Biol Chem. 2002 CacyBP/SIP, a calcyclin and Siah-1-interacting protein, binds EF-hand proteins of the S100 family Filipek A, Jastrzebska B, Nowotny M, Kuznicki J. J Biol Chem. 2002 Ca2+-dependent translocation of the calcyclin-binding protein in neurons and neuroblastoma NB-2a cells Filipek A, Jastrzebska B, Nowotny M, Kwiatkowska K, Hetman M, Surmacz L, Wyroba E,Kuznicki J J Biol Chem. 2002 Atypical PKU - treatment effectiveness Cabalska B, Nowacka M, Nowaczewska I, Zekanowski C, Zorska K Medycyna Wieku Rozwojowego VI. 2002 Novel PKU treatment methods Zekanowski C, Gizewska M, Nowacka M, Cabalska B Medycyna Wieku Rozwojowego. 2002 Genetic aspects of Alzheimer’s disease Zekanowski C Medycyna Ogólna. 2002