2012

RNAmap2D -- calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures Pietal MJ, Szostak N, Rother KM, Bujnicki JM BMC Bioinformatics. 2012 Structural basis of the TAL effector-DNA interaction Bochtler M Biol Chem. 2012 Molecular Mechanism of Mutant p53 Stabilization: The Role of HSP70 and MDM2 Wiech M, Olszewski MB, Tracz-Gaszewska Z, Wawrzynow B, Zylicz M, Zylicz A PLoS One. 2012 Novel beta-catenin target genes identified in thalamic neurons encode modulators of neuronal excitability Wisniewska MB, Nagalski A, Dabrowski M, Misztal K, Kuznicki J BMC Genomics. 2012 Anti-staphylococcal activities of lysostaphin and LytM catalytic domain Sabala I, Jonsson IM, Tarkowski A, Bochtler M BMC Microbiol. 2012 Crystal structure and mechanism of action of the N6-methyladenine dependent type IIM restriction endonuclease Siwek W, Czapinska H, Bochtler M, Bujnicki JM, Skowronek K Nucleic Acids Res. 2012 RPGR mutations might cause reduced orientation of respiratory cilia Bukowy-Bieryłło Z, Ziętkiewicz E, Loges NT, Wittmer M, Geremek M, Olbrich H, Fliegauf M, Voelkel K, Rutkiewicz E, Rutland J, Morgan L, Pogorzelski A, Martin J, Haan E, Berger W, Omran H, Witt M Pediatr Pulmonol.. 2012 Prenyltransferases Regulate CD20 Protein Levels and Influence Anti-CD20 Monoclonal Antibody-mediated Activation of Complement-dependent Cytotoxicity Winiarska M, Nowis D, Bil J, Glodkowska-Mrowka E, Muchowicz A, Wanczyk M, Bojarczuk K, Dwojak M, Firczuk M, Wilczek E, Wachowska M, Roszczenko K, Miaczynska M, Chlebowska J, Basak GW, Golab J J Biol Chem. 2012 In vivo evidence for cooperation of Mia40 and Erv1 in the oxidation of mitochondrial proteins Böttinger L*, Gornicka A*, Czerwik T, Bragoszewski P, Loniewska-Lwowska A, Schulze-Specking A, Truscott KN, Guiard B, Milenkovic D, Chacinska A, *equally contributing first author Mol Biol Cell. 2012 Intermembrane space proteome of yeast mitochondria Voegtle FN, Burkhart JM, Rao S, Gerbeth C, Hinrichs J, Martinou JC, Chacinska A, Sickmann A, Zahedi RP, Meisinger C Mol Cell Proteomics. 2012 Role of MINOS in protein biogenesis of the mitochondrial outer membrane Bohnert M, Wenz LS, Zerbes RM, Horvath SE, Stroud DA, von der Malsburg K, Müller JM, Oeljeklaus S, Perschil I, Warscheid B, Chacinska A, Veenhuis M, van der Klei IJ, Daum G, Wiedemann N, Becker T, Pfanner N, van der Laan M Mol Biol Cell.. 2012 Functional anatomy of neural circuits regulating fear and extinction Knapska E, Macias M, Mikosz M, Nowak A, Owczarek D, Wawrzyniak M, Pieprzyk M, Cymerman IA, Werka T, Sheng M, Maren S, Jaworski J, Kaczmarek L Proc. Natl. Acad. Sci.. 2012 Cytokinesis in Animal Cells Green RA,Paluch E, Oegema K Annu Rev Cell Dev Biol.. 2012 Actin cortex mechanics and cellular morphogenesis Salbreux G, Charras G, Paluch E Trends Cell Biol.. 2012 Adhesion Functions in Cell Sorting by Mechanically Coupling the Cortices of Adhering Cells Maître JL, Berthoumieux H, Krens SF, Salbreux G, Jülicher F, Paluch E, Heisenberg CP Science. 2012 Cell mechanics control rapid transitions between blebs and lamellipodia during migration Bergert M, Chandradoss SD, Desai RA, Paluch E Proc Natl Acad Sci U S A. 2012 P14ARF inhibits human glioblastoma-induced angiogenesis by upregulating the expression of TIMP3 Zerrouqi A, Pyrzynska B, Febbraio M, Brat DJ, Van Meir EG J Clin Invest.. 2012 Alteration of surface properties of dipalmitoyl phosphatidylcholine by benzo[a]pyrene: a model of pulmonary effects of diesel exhaust inhalation Sosnowski TR, Koliński M, Gradoń L J Biomed Nanotechnol. 2012 Protein kinase C regulates amino acid transporter ATB Samluk L, Czeredys M, Skowronek K, Nałęcz KA Biochem Biophys Res Commun.. 2012 Statins Impair Glucose Uptake in Tumor Cells Malenda A, Skrobanska A, Issat T, Winiarska M, Bil J, Oleszczak B, Sinski M, Firczuk M, Bujnicki JM, Chlebowska J, Staruch AD, Glodkowska-Mrowka E, Kunikowska J, Krolicki L, Szablewski L, Gaciong Z, Koziak K, Jakobisiak M, Golab J, Nowis DA Neoplasia. 2012 Crystal structure of 6-SST/6-SFT from Pachysandra terminalis, a plant fructan biosynthesizing enzyme in complex with its acceptor substrate 6-kestose Lammens W, Le Roy K, Yuan S, Vergauwen R, Rabijns A, Van Laere A, Strelkov SV, Van den Ende W Plant J.. 2012 Einstein–Hopf drag, Doppler shift of thermal radiation and blackbody drag: Three perspectives on quantum friction Lach G, DeKievet M, Jentschura UD Cent. Eur. J. Phys.. 2012 Identification and Regulation of a Molecular Module for Bleb-Based Cell Motility Goudarzi M, Banisch TU, Mobin MB, Maghelli N, Tarbashevich K, Strate I, van den Berg J, Blaser H, Bandemer S, Paluch E, Bakkers J, Tolić-Nørrelykke IM, Raz E Dev Cell. 2012 Crystal structures of the tRNA:m(2)G6 methyltransferase Trm14/TrmN from two domains of life Fislage M, Roovers M, Tuszynska I, Bujnicki JM, Droogmans L, Versées W Nucleic Acids Res. 2012 RNA-Puzzles: A CASP-like evaluation of RNA three-dimensional structure prediction Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, Patel DJ, Philips A, Puton T, Santalucia J, Sijenyi F, Hermann T, Rother K, Rother M, Serganov A, Skorupski M, Soltysinski T, Sripakdeevong P, Tuszynska I, Weeks KM, Waldsich C, Wildauer M, Leontis NB, Westhof E RNA. 2012 RIBER/DIBER: a software suite for crystal content analysis in the studies of protein-nucleic acid complexes Chojnowski G, Bujnicki JM, Bochtler M Bioinformatics. 2012 Highly Pathogenic Alzheimer's Disease Presenilin 1 P117R Mutation Causes a specific Increase in p53 and p21 Protein Levels and Cell Cycle Dysregulation in Human Lymphocytes Bialopiotrowicz E, Szybinska A, Kuzniewska B, Buizza L, Uberti D, Kuznicki J, Wojda U J Alzheimers Dis. 2012 Mammalian target of rapamycin complex 1 (MTORC1) and 2 MTORC2) control the dendritic arbor morphology of hippocampal neurons Urbanska M, Gozdz A, Swiech LJ, Jaworski J JBC. 2012 APPL1 regulates basal NF-κB activity by stabilizing NIK Hupalowska A, Pyrzynska B, Miaczynska M J Cell Sci. 2012 The MIA pathway: A tight bond between protein transport and oxidative folding in mitochondria Stojanovski D, Bragoszewski P, Chacinska A BBA-MOL CELL RES. 2012